PlantSME Plant secondary metabolism enzyme database

Vanilla planifolia (vanilla_planifolia)

Imported from atlas release summary for Vanilla planifolia.

1132
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.03% Alkaloid pathway 22.88% Phenylpropanoid pathway 22.79% Flavonoid pathway 12.9% Rosmarinic acid pathway 9.36% Steroid pathway 5.04%
Family Distribution
C4H 6.53% C3'H/CYP98A 5.81% BAHD 5.05% 4CL 4.64% POD 3.88% IFS 3.81% UGT 3.33% CYP76 3.3%
Other Families 63.66%
More Families (93)
T3O 95 3.26% 7DLGT 86 2.95% F3H 85 2.92% UFGT 80 2.75% NMT 73 2.51% CYP71 70 2.4% STR 61 2.1% F3'H/CYP75B 61 2.1% H6H 60 2.06% DWF4/CYP90B1 58 1.99% CAD 50 1.72% CODM/T6ODM 44 1.51% BR6OX2/CYP85A2 39 1.34% IFR 37 1.27% T16H 36 1.24% COMT 35 1.2% G8O/G8H 32 1.1% GS 32 1.1% PYKS 31 1.06% CAS 31 1.06% TPS 31 1.06% GES 30 1.03% PAL 30 1.03% SMT1/SMT2/SMT3 30 1.03% CYP90D1 28 0.96% LAC 26 0.89% CYP51G1 25 0.86% CSE 24 0.82% SLS 23 0.79% FNS 23 0.79% RAS 23 0.79% TRI/TRII 22 0.76% HCT 20 0.69% SGD 19 0.65% 16OMT 19 0.65% IO 18 0.62% ANR 18 0.62% CPD/CYP90A1 18 0.62% 8HGO 17 0.58% F5H/CYP84A 17 0.58% CCR 17 0.58% F3'5'H/CYP75A 16 0.55% PMT 14 0.48% CHS 13 0.45% MPO 12 0.41% DFR 12 0.41% CCoAOMT 12 0.41% CNMT 11 0.38% ANS/LDOX 11 0.38% BR6OX1/CYP85A1 11 0.38% CPR 10 0.34% BBE 9 0.31% NCS 8 0.27% COR 8 0.27% FPPS 8 0.27% CYP719 7 0.24% 7DLH 7 0.24% GGPPS 7 0.24% CYP80B1 6 0.21% SMO1/SMO2 6 0.21% ROT3/CYP90C1 6 0.21% AACT 6 0.21% FLS 5 0.17% SQS/FDFT1 5 0.17% MVK 5 0.17% MVD 5 0.17% HMGR 5 0.17% TAT 4 0.14% DET2 4 0.14% ADC 3 0.1% TYDC_DDC 3 0.1% ISY 3 0.1% LAMT 3 0.1% FK 3 0.1% DWF5 3 0.1% MCT/IspD 3 0.1% 6OMT_4OMT_SOMT 2 0.07% CHI 2 0.07% SQE 2 0.07% HYD1 2 0.07% CPI1 2 0.07% DXR 2 0.07% PMK 2 0.07% DXS 2 0.07% TDC 1 0.03% XMT_MXMT_DXMT 1 0.03% HPPR 1 0.03% DWF7 1 0.03% MDS/IspF 1 0.03% HMGS 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03% CMK/IspE 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 306 18 BAHD (116) View species results
Alkaloid pathway 259 23 NMT (44) View species results
Phenylpropanoid pathway 258 13 POD (102) View species results
Flavonoid pathway 146 12 UFGT (68) View species results
Rosmarinic acid pathway 106 7 C4H (42) View species results
Steroid pathway 57 11 CAS (21) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1139 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 190 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
KAG0453328.1[Vanilla Alkaloid PYKS medium pass
KAG0457273.1[Vanilla Alkaloid PYKS high pass
KAG0457516.1[Vanilla Alkaloid PYKS high pass
KAG0457517.1[Vanilla Alkaloid PYKS high pass
KAG0457518.1[Vanilla Alkaloid PYKS high pass
KAG0457519.1[Vanilla Alkaloid PYKS medium pass
KAG0457520.1[Vanilla Alkaloid PYKS high pass
KAG0457561.1[Vanilla Alkaloid PYKS high pass
KAG0457865.1[Vanilla Alkaloid PYKS high pass
KAG0458251.1[Vanilla Alkaloid PYKS low borderline
KAG0458252.1[Vanilla Alkaloid PYKS low borderline
KAG0460413.1[Vanilla Alkaloid PYKS high pass
KAG0460998.1[Vanilla Alkaloid PYKS low borderline
KAG0464271.1[Vanilla Alkaloid PYKS low borderline
KAG0467471.1[Vanilla Alkaloid PYKS low borderline
KAG0469870.1[Vanilla Alkaloid PYKS low borderline
KAG0469892.1[Vanilla Alkaloid PYKS low borderline
KAG0476140.1[Vanilla Alkaloid PYKS high pass
KAG0476213.1[Vanilla Alkaloid PYKS low borderline
KAG0484469.1[Vanilla Alkaloid PYKS low borderline
KAG0484586.1[Vanilla Alkaloid PYKS low borderline
KAG0485035.1[Vanilla Alkaloid PYKS low borderline
KAG0485593.1[Vanilla Alkaloid PYKS high pass
KAG0488861.1[Vanilla Alkaloid PYKS low borderline
KAG0489192.1[Vanilla Alkaloid PYKS low borderline
KAG0491399.1[Vanilla Alkaloid PYKS high pass
KAG0491728.1[Vanilla Alkaloid PYKS low borderline
KAG0491770.1[Vanilla Alkaloid PYKS low borderline
KAG0492739.1[Vanilla Alkaloid PYKS low borderline
KAG0495979.1[Vanilla Alkaloid PYKS low borderline
KAG0498105.1[Vanilla Alkaloid PYKS low borderline