PlantSME Plant secondary metabolism enzyme database

Vernicia fordii (vernicia_fordii)

Imported from atlas release summary for Vernicia fordii.

2274
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.07% Alkaloid pathway 21.77% Phenylpropanoid pathway 19.17% Flavonoid pathway 11.61% Rosmarinic acid pathway 9.28% Steroid pathway 9.1%
Family Distribution
C4H 5.99% BAHD 5.86% C3'H/CYP98A 5.77% 4CL 4.06% IFS 4.05% UGT 3.87% CYP76 3.64% T3O 3.62%
Other Families 63.14%
More Families (97)
7DLGT 184 3.28% UFGT 178 3.17% F3H 176 3.14% POD 166 2.96% NMT 148 2.64% DWF4/CYP90B1 140 2.5% CAD 111 1.98% CAS 102 1.82% F3'H/CYP75B 98 1.75% CODM/T6ODM 95 1.69% BR6OX2/CYP85A2 92 1.64% TRI/TRII 89 1.59% SMT1/SMT2/SMT3 89 1.59% CYP71 87 1.55% STR 83 1.48% H6H 81 1.44% CYP90D1 63 1.12% GS 62 1.1% TPS 61 1.09% GES 57 1.02% IFR 57 1.02% COMT 57 1.02% T16H 55 0.98% CSE 51 0.91% SGD 49 0.87% LAC 48 0.86% ANR 44 0.78% TAT 41 0.73% 16OMT 38 0.68% RAS 38 0.68% IO 37 0.66% NCS 34 0.61% HCT 33 0.59% 8HGO 32 0.57% LAMT 31 0.55% FNS 31 0.55% CCR 31 0.55% BBE 30 0.53% COR 29 0.52% G8O/G8H 29 0.52% SLS 28 0.5% BR6OX1/CYP85A1 28 0.5% 7DLH 27 0.48% PMT 27 0.48% PAL 27 0.48% MPO 24 0.43% SQE 24 0.43% F3'5'H/CYP75A 22 0.39% PYKS 21 0.37% ROT3/CYP90C1 21 0.37% CYP51G1 21 0.37% CPD/CYP90A1 20 0.36% CNMT 19 0.34% DXS 19 0.34% F5H/CYP84A 15 0.27% DFR 14 0.25% AACT 14 0.25% ANS/LDOX 12 0.21% CCoAOMT 12 0.21% TYDC_DDC 11 0.2% CPR 11 0.2% ISY 10 0.18% MVK 10 0.18% CYP719 9 0.16% CHS 9 0.16% FPPS 9 0.16% CYP80B1 8 0.14% CHI 8 0.14% MCT/IspD 8 0.14% HMGR 8 0.14% GGPPS 8 0.14% XMT_MXMT_DXMT 7 0.12% HPPR 7 0.12% SMO1/SMO2 7 0.12% HYD1 6 0.11% SQS/FDFT1 6 0.11% ODC 5 0.09% MVD 5 0.09% CMK/IspE 5 0.09% CPI1 4 0.07% 6OMT_4OMT_SOMT 3 0.05% DET2 3 0.05% DWF5 3 0.05% ADC 2 0.04% TDC 2 0.04% DWF1 2 0.04% HMGS 2 0.04% IDI 2 0.04% HDR/IspH 2 0.04% DXR 2 0.04% CYP80F1 1 0.02% FLS 1 0.02% DWF7 1 0.02% FK 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 661 18 BAHD (268) View species results
Alkaloid pathway 495 25 7DLGT (85) View species results
Phenylpropanoid pathway 436 12 POD (154) View species results
Flavonoid pathway 264 12 UFGT (168) View species results
Rosmarinic acid pathway 211 7 C4H (89) View species results
Steroid pathway 207 12 CAS (90) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2095 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 400 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
VforGWHAAEU000150630328450.2 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
VforGWHAAEU000150630328450.3 Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
VforGWHAAEU000160610353990.1 Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
VforGWHAAEU000166180368100.1 Terpenoid TPS medium pass TPS__00003__sp_A0A0M4M0T9_TPS28_TRIWF
VforGWHAAEU000195710441090.1 Terpenoid TPS medium pass TPS__00049__sp_A0A4Y5QZ62_T19BL_CANSA
VforGWHAAEU000200820453290.1 Terpenoid TPS medium pass TPS__00061__sp_B9SBU9_TPS5_RICCO
VforGWHAAEU000201360454050.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
VforGWHAAEU000203030457730.1 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
VforGWHAAEU000203030457730.2 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
VforGWHAAEU000203910459600.1 Terpenoid TPS medium pass TPS__00128__sp_J7LMP2_TPS5_PHYDL
VforGWHAAEU000203910459610.1 Terpenoid TPS medium pass TPS__00008__sp_A0A167V661_TPS8_CAMSI