PlantSME Plant secondary metabolism enzyme database

Vernicia fordii (vernicia_fordii)

Imported from atlas release summary for Vernicia fordii.

2274
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.07% Alkaloid pathway 21.77% Phenylpropanoid pathway 19.17% Flavonoid pathway 11.61% Rosmarinic acid pathway 9.28% Steroid pathway 9.1%
Family Distribution
C4H 5.99% BAHD 5.86% C3'H/CYP98A 5.77% 4CL 4.06% IFS 4.05% UGT 3.87% CYP76 3.64% T3O 3.62%
Other Families 63.14%
More Families (97)
7DLGT 184 3.28% UFGT 178 3.17% F3H 176 3.14% POD 166 2.96% NMT 148 2.64% DWF4/CYP90B1 140 2.5% CAD 111 1.98% CAS 102 1.82% F3'H/CYP75B 98 1.75% CODM/T6ODM 95 1.69% BR6OX2/CYP85A2 92 1.64% TRI/TRII 89 1.59% SMT1/SMT2/SMT3 89 1.59% CYP71 87 1.55% STR 83 1.48% H6H 81 1.44% CYP90D1 63 1.12% GS 62 1.1% TPS 61 1.09% GES 57 1.02% IFR 57 1.02% COMT 57 1.02% T16H 55 0.98% CSE 51 0.91% SGD 49 0.87% LAC 48 0.86% ANR 44 0.78% TAT 41 0.73% 16OMT 38 0.68% RAS 38 0.68% IO 37 0.66% NCS 34 0.61% HCT 33 0.59% 8HGO 32 0.57% LAMT 31 0.55% FNS 31 0.55% CCR 31 0.55% BBE 30 0.53% COR 29 0.52% G8O/G8H 29 0.52% SLS 28 0.5% BR6OX1/CYP85A1 28 0.5% 7DLH 27 0.48% PMT 27 0.48% PAL 27 0.48% MPO 24 0.43% SQE 24 0.43% F3'5'H/CYP75A 22 0.39% PYKS 21 0.37% ROT3/CYP90C1 21 0.37% CYP51G1 21 0.37% CPD/CYP90A1 20 0.36% CNMT 19 0.34% DXS 19 0.34% F5H/CYP84A 15 0.27% DFR 14 0.25% AACT 14 0.25% ANS/LDOX 12 0.21% CCoAOMT 12 0.21% TYDC_DDC 11 0.2% CPR 11 0.2% ISY 10 0.18% MVK 10 0.18% CYP719 9 0.16% CHS 9 0.16% FPPS 9 0.16% CYP80B1 8 0.14% CHI 8 0.14% MCT/IspD 8 0.14% HMGR 8 0.14% GGPPS 8 0.14% XMT_MXMT_DXMT 7 0.12% HPPR 7 0.12% SMO1/SMO2 7 0.12% HYD1 6 0.11% SQS/FDFT1 6 0.11% ODC 5 0.09% MVD 5 0.09% CMK/IspE 5 0.09% CPI1 4 0.07% 6OMT_4OMT_SOMT 3 0.05% DET2 3 0.05% DWF5 3 0.05% ADC 2 0.04% TDC 2 0.04% DWF1 2 0.04% HMGS 2 0.04% IDI 2 0.04% HDR/IspH 2 0.04% DXR 2 0.04% CYP80F1 1 0.02% FLS 1 0.02% DWF7 1 0.02% FK 1 0.02% PMK 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 661 18 BAHD (268) View species results
Alkaloid pathway 495 25 7DLGT (85) View species results
Phenylpropanoid pathway 436 12 POD (154) View species results
Flavonoid pathway 264 12 UFGT (168) View species results
Rosmarinic acid pathway 211 7 C4H (89) View species results
Steroid pathway 207 12 CAS (90) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2095 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 400 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
VforGWHAAEU000006000009520.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00001__sp_A0AA51Z3J4_TYDC2_LOPWI
VforGWHAAEU000072200117110.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VforGWHAAEU000130750260340.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VforGWHAAEU000142860304700.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
VforGWHAAEU000180280404700.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
VforGWHAAEU000189930427930.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
VforGWHAAEU000189930427930.2 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
VforGWHAAEU000189930427930.3 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
VforGWHAAEU000189930427930.4 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
VforGWHAAEU000189930427930.5 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
VforGWHAAEU000189930427930.6 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH