PlantSME Plant secondary metabolism enzyme database

Vicia sativa (vicia_sativa)

Imported from atlas release summary for Vicia sativa.

2015
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.99% Alkaloid pathway 22.18% Phenylpropanoid pathway 20.79% Flavonoid pathway 15.98% Rosmarinic acid pathway 7.84% Steroid pathway 5.21%
Family Distribution
C3'H/CYP98A 5.98% C4H 5.7% BAHD 5.23% UGT 5.03% UFGT 4.57% 7DLGT 4.47% IFS 4.09% T3O 3.71%
Other Families 61.21%
More Families (98)
4CL 177 3.55% CYP76 176 3.53% POD 175 3.51% F3H 146 2.93% DWF4/CYP90B1 97 1.95% NMT 94 1.89% F3'H/CYP75B 87 1.74% CODM/T6ODM 86 1.72% BR6OX2/CYP85A2 86 1.72% CSE 75 1.5% STR 73 1.46% SGD 67 1.34% CYP71 67 1.34% SMT1/SMT2/SMT3 65 1.3% H6H 64 1.28% CAD 58 1.16% PYKS 57 1.14% TRI/TRII 56 1.12% CYP90D1 53 1.06% IFR 51 1.02% CAS 51 1.02% COMT 50 1.0% HCT 47 0.94% PAL 45 0.9% ANR 44 0.88% BBE 42 0.84% LAC 39 0.78% RAS 38 0.76% T16H 37 0.74% CCR 37 0.74% 7DLH 35 0.7% CYP51G1 35 0.7% G8O/G8H 34 0.68% GS 32 0.64% TPS 32 0.64% GES 30 0.6% PMT 30 0.6% 16OMT 30 0.6% NCS 29 0.58% IO 28 0.56% CHS 26 0.52% F3'5'H/CYP75A 25 0.5% CPD/CYP90A1 25 0.5% FNS 24 0.48% COR 22 0.44% SLS 21 0.42% BR6OX1/CYP85A1 20 0.4% F5H/CYP84A 19 0.38% 8HGO 18 0.36% DFR 18 0.36% LAMT 17 0.34% ROT3/CYP90C1 16 0.32% CCoAOMT 13 0.26% TAT 13 0.26% TYDC_DDC 10 0.2% CHI 10 0.2% ANS/LDOX 10 0.2% HPPR 10 0.2% DWF5 9 0.18% CNMT 8 0.16% CYP719 8 0.16% MPO 8 0.16% CPR 8 0.16% AACT 8 0.16% FPPS 8 0.16% TDC 7 0.14% DET2 7 0.14% SQS/FDFT1 7 0.14% GGPPS 7 0.14% MVK 7 0.14% CYP80B1 6 0.12% ADC 6 0.12% SQE 6 0.12% DXS 6 0.12% ISY 5 0.1% HMGR 5 0.1% FLS 4 0.08% SMO1/SMO2 4 0.08% DWF7 4 0.08% DXR 4 0.08% HDR/IspH 4 0.08% MVD 4 0.08% XMT_MXMT_DXMT 3 0.06% IDI 3 0.06% PMK 3 0.06% MDS/IspF 3 0.06% DWF1 2 0.04% CPI1 2 0.04% MCT/IspD 2 0.04% CMK/IspE 2 0.04% HMGS 2 0.04% HDS/IspG 2 0.04% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02% ODC 1 0.02% FK 1 0.02% HYD1 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 564 21 UGT (237) View species results
Alkaloid pathway 447 27 7DLGT (102) View species results
Phenylpropanoid pathway 419 11 POD (158) View species results
Flavonoid pathway 322 8 UFGT (213) View species results
Rosmarinic acid pathway 158 7 C4H (62) View species results
Steroid pathway 105 12 SMT1/SMT2/SMT3 (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1847 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 346 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status Best Target
vicia_sativa_jg12833.t1 Flavonoid CHI medium pass CHI__00005__sp_P28012_CFI1_MEDSA
vicia_sativa_jg12834.t1 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
vicia_sativa_jg12835.t1 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
vicia_sativa_jg12836.t1 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA
vicia_sativa_jg13043.t1 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
vicia_sativa_jg13044.t1 Flavonoid CHI medium pass CHI__00009__sp_Q53B70_CF1B2_SOYBN
vicia_sativa_jg13045.t1 Flavonoid CHI medium pass CHI__00012__sp_Q8H0G1_CFI2_LOTJA
vicia_sativa_jg13095.t1 Flavonoid CHI medium pass CHI__00005__sp_P28012_CFI1_MEDSA
vicia_sativa_jg44905.t1 Flavonoid CHI low borderline CHI__00009__sp_Q53B70_CF1B2_SOYBN
vicia_sativa_jg54153.t1 Flavonoid CHI medium pass CHI__00001__sp_A0A2U7XUE3_CHIL2_HUMLU