Vigna radiata (vigna_radiata)
Imported from atlas release summary for Vigna radiata.
1069
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1069
Candidate Genes
BAHD
6.98%
POD
5.15%
C4H
5.03%
4CL
4.8%
C3'H/CYP98A
4.68%
UGT
3.39%
7DLGT
3.2%
UFGT
3.16%
Other Families
63.63%
More Families (95)
F3H
79
3.08%
CYP76
77
3.0%
IFS
74
2.88%
NMT
69
2.69%
T3O
64
2.5%
CAD
54
2.11%
CODM/T6ODM
49
1.91%
DWF4/CYP90B1
49
1.91%
SMT1/SMT2/SMT3
49
1.91%
H6H
45
1.75%
STR
44
1.72%
F3'H/CYP75B
39
1.52%
CSE
36
1.4%
CAS
36
1.4%
LAC
35
1.36%
BR6OX2/CYP85A2
34
1.33%
TRI/TRII
33
1.29%
RAS
30
1.17%
TPS
30
1.17%
CYP71
30
1.17%
BBE
29
1.13%
HCT
28
1.09%
GES
27
1.05%
IFR
26
1.01%
PYKS
25
0.97%
GS
24
0.94%
T16H
21
0.82%
SGD
21
0.82%
7DLH
18
0.7%
PMT
18
0.7%
G8O/G8H
17
0.66%
COMT
17
0.66%
SLS
15
0.58%
CCR
15
0.58%
CYP90D1
15
0.58%
ANR
14
0.55%
TAT
14
0.55%
FNS
13
0.51%
F5H/CYP84A
13
0.51%
IO
12
0.47%
CNMT
12
0.47%
F3'5'H/CYP75A
12
0.47%
ANS/LDOX
12
0.47%
PAL
12
0.47%
CPD/CYP90A1
12
0.47%
BR6OX1/CYP85A1
12
0.47%
8HGO
11
0.43%
NCS
11
0.43%
DFR
11
0.43%
16OMT
10
0.39%
COR
9
0.35%
CHS
9
0.35%
CPR
9
0.35%
GGPPS
9
0.35%
DXS
9
0.35%
FPPS
8
0.31%
MPO
7
0.27%
SQS/FDFT1
7
0.27%
LAMT
6
0.23%
HPPR
6
0.23%
SQE
6
0.23%
SMO1/SMO2
6
0.23%
CYP51G1
6
0.23%
HMGR
6
0.23%
CYP719
5
0.19%
XMT_MXMT_DXMT
5
0.19%
ROT3/CYP90C1
5
0.19%
AACT
5
0.19%
TDC
4
0.16%
DET2
4
0.16%
HMGS
4
0.16%
MVD
4
0.16%
MVK
4
0.16%
ISY
3
0.12%
CHI
3
0.12%
MCT/IspD
3
0.12%
DXR
3
0.12%
TYDC_DDC
2
0.08%
6OMT_4OMT_SOMT
2
0.08%
CYP80B1
2
0.08%
CCoAOMT
2
0.08%
HYD1
2
0.08%
DWF1
2
0.08%
ODC
1
0.04%
ADC
1
0.04%
FLS
1
0.04%
DWF7
1
0.04%
FK
1
0.04%
DWF5
1
0.04%
CPI1
1
0.04%
HDR/IspH
1
0.04%
HDS/IspG
1
0.04%
IDI
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 17 | BAHD (136) | View species results |
| Alkaloid pathway | 241 | 18 | NMT (40) | View species results |
| Phenylpropanoid pathway | 239 | 11 | POD (108) | View species results |
| Flavonoid pathway | 127 | 11 | UFGT (74) | View species results |
| Rosmarinic acid pathway | 86 | 7 | 4CL (23) | View species results |
| Steroid pathway | 66 | 10 | SMT1/SMT2/SMT3 (27) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 781 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 237 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Vrad10G0001870.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Vrad10G0011430.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Vrad10G0011430.2 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Vrad11G0002160.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Vrad11G0003310.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Vrad11G0004630.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Vrad11G0004630.2 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| Vrad11G0005250.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| Vrad11G0005570.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| Vrad11G0011580.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Vradscaffold_1340002840.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| Vradscaffold_1600006750.1 | Alkaloid | NMT | medium | pass | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Vradscaffold_2280014570.1 | Alkaloid | NMT | low | borderline | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| Vradscaffold_3070022270.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Vradscaffold_3190022960.1 | Alkaloid | NMT | low | borderline | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Vradscaffold_480031520.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| Vradscaffold_70034000.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Vradscaffold_70035710.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Vradscaffold_830038340.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |