PlantSME Plant secondary metabolism enzyme database

Vigna radiata (vigna_radiata)

Imported from atlas release summary for Vigna radiata.

1069
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.0% Alkaloid pathway 22.54% Phenylpropanoid pathway 22.36% Flavonoid pathway 11.88% Rosmarinic acid pathway 8.04% Steroid pathway 6.17%
Family Distribution
BAHD 6.98% POD 5.15% C4H 5.03% 4CL 4.8% C3'H/CYP98A 4.68% UGT 3.39% 7DLGT 3.2% UFGT 3.16%
Other Families 63.63%
More Families (95)
F3H 79 3.08% CYP76 77 3.0% IFS 74 2.88% NMT 69 2.69% T3O 64 2.5% CAD 54 2.11% CODM/T6ODM 49 1.91% DWF4/CYP90B1 49 1.91% SMT1/SMT2/SMT3 49 1.91% H6H 45 1.75% STR 44 1.72% F3'H/CYP75B 39 1.52% CSE 36 1.4% CAS 36 1.4% LAC 35 1.36% BR6OX2/CYP85A2 34 1.33% TRI/TRII 33 1.29% RAS 30 1.17% TPS 30 1.17% CYP71 30 1.17% BBE 29 1.13% HCT 28 1.09% GES 27 1.05% IFR 26 1.01% PYKS 25 0.97% GS 24 0.94% T16H 21 0.82% SGD 21 0.82% 7DLH 18 0.7% PMT 18 0.7% G8O/G8H 17 0.66% COMT 17 0.66% SLS 15 0.58% CCR 15 0.58% CYP90D1 15 0.58% ANR 14 0.55% TAT 14 0.55% FNS 13 0.51% F5H/CYP84A 13 0.51% IO 12 0.47% CNMT 12 0.47% F3'5'H/CYP75A 12 0.47% ANS/LDOX 12 0.47% PAL 12 0.47% CPD/CYP90A1 12 0.47% BR6OX1/CYP85A1 12 0.47% 8HGO 11 0.43% NCS 11 0.43% DFR 11 0.43% 16OMT 10 0.39% COR 9 0.35% CHS 9 0.35% CPR 9 0.35% GGPPS 9 0.35% DXS 9 0.35% FPPS 8 0.31% MPO 7 0.27% SQS/FDFT1 7 0.27% LAMT 6 0.23% HPPR 6 0.23% SQE 6 0.23% SMO1/SMO2 6 0.23% CYP51G1 6 0.23% HMGR 6 0.23% CYP719 5 0.19% XMT_MXMT_DXMT 5 0.19% ROT3/CYP90C1 5 0.19% AACT 5 0.19% TDC 4 0.16% DET2 4 0.16% HMGS 4 0.16% MVD 4 0.16% MVK 4 0.16% ISY 3 0.12% CHI 3 0.12% MCT/IspD 3 0.12% DXR 3 0.12% TYDC_DDC 2 0.08% 6OMT_4OMT_SOMT 2 0.08% CYP80B1 2 0.08% CCoAOMT 2 0.08% HYD1 2 0.08% DWF1 2 0.08% ODC 1 0.04% ADC 1 0.04% FLS 1 0.04% DWF7 1 0.04% FK 1 0.04% DWF5 1 0.04% CPI1 1 0.04% HDR/IspH 1 0.04% HDS/IspG 1 0.04% IDI 1 0.04% PMK 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 310 17 BAHD (136) View species results
Alkaloid pathway 241 18 NMT (40) View species results
Phenylpropanoid pathway 239 11 POD (108) View species results
Flavonoid pathway 127 11 UFGT (74) View species results
Rosmarinic acid pathway 86 7 4CL (23) View species results
Steroid pathway 66 10 SMT1/SMT2/SMT3 (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 781 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 237 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
Vrad01G0008700.1 Alkaloid PYKS low borderline
Vrad02G0002100.1 Alkaloid PYKS medium pass
Vrad02G0005260.1 Alkaloid PYKS low borderline
Vrad02G0013330.1 Alkaloid PYKS low borderline
Vrad04G0004600.1 Alkaloid PYKS high pass
Vrad04G0005770.1 Alkaloid PYKS low borderline
Vrad05G0000430.1 Alkaloid PYKS low borderline
Vrad05G0000940.1 Alkaloid PYKS low borderline
Vrad05G0011240.1 Alkaloid PYKS low borderline
Vrad06G0015880.1 Alkaloid PYKS low borderline
Vrad07G0008030.1 Alkaloid PYKS high pass
Vrad07G0008690.1 Alkaloid PYKS high pass
Vrad07G0019840.1 Alkaloid PYKS low borderline
Vrad08G0000150.1 Alkaloid PYKS low borderline
Vrad08G0014530.1 Alkaloid PYKS low borderline
Vrad08G0021380.1 Alkaloid PYKS low borderline
Vrad10G0010840.1 Alkaloid PYKS low borderline
Vrad10G0012840.1 Alkaloid PYKS low borderline
Vrad10G0012900.1 Alkaloid PYKS low borderline
Vrad11G0012610.1 Alkaloid PYKS low borderline
Vradscaffold_1670007670.1 Alkaloid PYKS high pass
Vradscaffold_1840010410.1 Alkaloid PYKS medium pass
Vradscaffold_2090012470.1 Alkaloid PYKS high pass
Vradscaffold_2890020800.1 Alkaloid PYKS medium pass
Vradscaffold_70035600.1 Alkaloid PYKS high pass