PlantSME Plant secondary metabolism enzyme database

Vigna radiata (vigna_radiata)

Imported from atlas release summary for Vigna radiata.

1069
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.0% Alkaloid pathway 22.54% Phenylpropanoid pathway 22.36% Flavonoid pathway 11.88% Rosmarinic acid pathway 8.04% Steroid pathway 6.17%
Family Distribution
BAHD 6.98% POD 5.15% C4H 5.03% 4CL 4.8% C3'H/CYP98A 4.68% UGT 3.39% 7DLGT 3.2% UFGT 3.16%
Other Families 63.63%
More Families (95)
F3H 79 3.08% CYP76 77 3.0% IFS 74 2.88% NMT 69 2.69% T3O 64 2.5% CAD 54 2.11% CODM/T6ODM 49 1.91% DWF4/CYP90B1 49 1.91% SMT1/SMT2/SMT3 49 1.91% H6H 45 1.75% STR 44 1.72% F3'H/CYP75B 39 1.52% CSE 36 1.4% CAS 36 1.4% LAC 35 1.36% BR6OX2/CYP85A2 34 1.33% TRI/TRII 33 1.29% RAS 30 1.17% TPS 30 1.17% CYP71 30 1.17% BBE 29 1.13% HCT 28 1.09% GES 27 1.05% IFR 26 1.01% PYKS 25 0.97% GS 24 0.94% T16H 21 0.82% SGD 21 0.82% 7DLH 18 0.7% PMT 18 0.7% G8O/G8H 17 0.66% COMT 17 0.66% SLS 15 0.58% CCR 15 0.58% CYP90D1 15 0.58% ANR 14 0.55% TAT 14 0.55% FNS 13 0.51% F5H/CYP84A 13 0.51% IO 12 0.47% CNMT 12 0.47% F3'5'H/CYP75A 12 0.47% ANS/LDOX 12 0.47% PAL 12 0.47% CPD/CYP90A1 12 0.47% BR6OX1/CYP85A1 12 0.47% 8HGO 11 0.43% NCS 11 0.43% DFR 11 0.43% 16OMT 10 0.39% COR 9 0.35% CHS 9 0.35% CPR 9 0.35% GGPPS 9 0.35% DXS 9 0.35% FPPS 8 0.31% MPO 7 0.27% SQS/FDFT1 7 0.27% LAMT 6 0.23% HPPR 6 0.23% SQE 6 0.23% SMO1/SMO2 6 0.23% CYP51G1 6 0.23% HMGR 6 0.23% CYP719 5 0.19% XMT_MXMT_DXMT 5 0.19% ROT3/CYP90C1 5 0.19% AACT 5 0.19% TDC 4 0.16% DET2 4 0.16% HMGS 4 0.16% MVD 4 0.16% MVK 4 0.16% ISY 3 0.12% CHI 3 0.12% MCT/IspD 3 0.12% DXR 3 0.12% TYDC_DDC 2 0.08% 6OMT_4OMT_SOMT 2 0.08% CYP80B1 2 0.08% CCoAOMT 2 0.08% HYD1 2 0.08% DWF1 2 0.08% ODC 1 0.04% ADC 1 0.04% FLS 1 0.04% DWF7 1 0.04% FK 1 0.04% DWF5 1 0.04% CPI1 1 0.04% HDR/IspH 1 0.04% HDS/IspG 1 0.04% IDI 1 0.04% PMK 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 310 17 BAHD (136) View species results
Alkaloid pathway 241 18 NMT (40) View species results
Phenylpropanoid pathway 239 11 POD (108) View species results
Flavonoid pathway 127 11 UFGT (74) View species results
Rosmarinic acid pathway 86 7 4CL (23) View species results
Steroid pathway 66 10 SMT1/SMT2/SMT3 (27) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 781 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 237 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
Vrad01G0004400.1 Alkaloid T16H medium borderline
Vrad02G0010120.1 Alkaloid T16H medium borderline
Vrad05G0006010.1 Alkaloid T16H medium borderline
Vrad06G0006370.1 Alkaloid T16H medium borderline
Vrad06G0012780.1 Alkaloid T16H medium borderline
Vrad06G0015170.1 Alkaloid T16H medium borderline
Vrad06G0016760.1 Alkaloid T16H medium borderline
Vrad07G0014480.1 Alkaloid T16H medium borderline
Vrad08G0004280.1 Alkaloid T16H low borderline
Vrad08G0016260.1 Alkaloid T16H medium borderline
Vrad08G0021470.1 Alkaloid T16H medium borderline
Vrad09G0005450.1 Alkaloid T16H medium borderline
Vrad09G0008270.1 Alkaloid T16H medium borderline
Vrad10G0003920.1 Alkaloid T16H medium borderline
Vrad10G0005710.1 Alkaloid T16H medium borderline
Vrad11G0005620.1 Alkaloid T16H medium borderline
Vrad11G0008080.1 Alkaloid T16H low borderline
Vradscaffold_1310002380.1 Alkaloid T16H medium borderline
Vradscaffold_1340002990.1 Alkaloid T16H medium borderline
Vradscaffold_1790009220.1 Alkaloid T16H medium borderline
Vradscaffold_3010021810.1 Alkaloid T16H medium borderline