Vigna radiata (vigna_radiata)
Imported from atlas release summary for Vigna radiata.
1368
Candidate Protein Records
1069
Pathway-Level Records
2565
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2565
Family-Level Calls
BAHD
6.98%
POD
5.15%
C4H
5.03%
4CL
4.8%
C3'H/CYP98A
4.68%
UGT
3.39%
7DLGT
3.2%
UFGT
3.16%
Other Families
63.63%
More Families (95)
F3H
79
3.08%
CYP76
77
3.0%
IFS
74
2.88%
NMT
69
2.69%
T3O
64
2.5%
CAD
54
2.11%
CODM/T6ODM
49
1.91%
DWF4/CYP90B1
49
1.91%
SMT1/SMT2/SMT3
49
1.91%
H6H
45
1.75%
STR
44
1.72%
F3'H/CYP75B
39
1.52%
CSE
36
1.4%
CAS
36
1.4%
LAC
35
1.36%
BR6OX2/CYP85A2
34
1.33%
TRI/TRII
33
1.29%
RAS
30
1.17%
TPS
30
1.17%
CYP71
30
1.17%
BBE
29
1.13%
HCT
28
1.09%
GES
27
1.05%
IFR
26
1.01%
PYKS
25
0.97%
GS
24
0.94%
T16H
21
0.82%
SGD
21
0.82%
7DLH
18
0.7%
PMT
18
0.7%
G8O/G8H
17
0.66%
COMT
17
0.66%
SLS
15
0.58%
CCR
15
0.58%
CYP90D1
15
0.58%
ANR
14
0.55%
TAT
14
0.55%
FNS
13
0.51%
F5H/CYP84A
13
0.51%
IO
12
0.47%
CNMT
12
0.47%
F3'5'H/CYP75A
12
0.47%
ANS/LDOX
12
0.47%
PAL
12
0.47%
CPD/CYP90A1
12
0.47%
BR6OX1/CYP85A1
12
0.47%
8HGO
11
0.43%
NCS
11
0.43%
DFR
11
0.43%
16OMT
10
0.39%
COR
9
0.35%
CHS
9
0.35%
CPR
9
0.35%
GGPPS
9
0.35%
DXS
9
0.35%
FPPS
8
0.31%
MPO
7
0.27%
SQS/FDFT1
7
0.27%
LAMT
6
0.23%
HPPR
6
0.23%
SQE
6
0.23%
SMO1/SMO2
6
0.23%
CYP51G1
6
0.23%
HMGR
6
0.23%
CYP719
5
0.19%
XMT_MXMT_DXMT
5
0.19%
ROT3/CYP90C1
5
0.19%
AACT
5
0.19%
TDC
4
0.16%
DET2
4
0.16%
HMGS
4
0.16%
MVD
4
0.16%
MVK
4
0.16%
ISY
3
0.12%
CHI
3
0.12%
MCT/IspD
3
0.12%
DXR
3
0.12%
TYDC_DDC
2
0.08%
6OMT_4OMT_SOMT
2
0.08%
CYP80B1
2
0.08%
CCoAOMT
2
0.08%
HYD1
2
0.08%
DWF1
2
0.08%
ODC
1
0.04%
ADC
1
0.04%
FLS
1
0.04%
DWF7
1
0.04%
FK
1
0.04%
DWF5
1
0.04%
CPI1
1
0.04%
HDR/IspH
1
0.04%
HDS/IspG
1
0.04%
IDI
1
0.04%
PMK
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 17 | BAHD (136) | View species results |
| Alkaloid pathway | 241 | 18 | NMT (40) | View species results |
| Phenylpropanoid pathway | 239 | 11 | POD (108) | View species results |
| Flavonoid pathway | 127 | 11 | UFGT (74) | View species results |
| Rosmarinic acid pathway | 86 | 7 | 4CL (23) | View species results |
| Steroid pathway | 66 | 10 | SMT1/SMT2/SMT3 (27) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 781 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 237 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Vradscaffold_830038340.1 | Alkaloid | NMT | medium | pass |
| Vrad05G0014180.1 | Alkaloid | ODC | medium | pass |
| Vrad02G0013280.1 | Alkaloid | PMT | low | borderline |
| Vrad03G0002130.1 | Alkaloid | PMT | medium | borderline |
| Vrad03G0006880.1 | Alkaloid | PMT | medium | pass |
| Vrad05G0004000.1 | Alkaloid | PMT | medium | borderline |
| Vrad05G0013420.1 | Alkaloid | PMT | low | borderline |
| Vrad05G0016180.1 | Alkaloid | PMT | medium | pass |
| Vrad05G0016270.1 | Alkaloid | PMT | medium | pass |
| Vrad06G0004300.1 | Alkaloid | PMT | low | borderline |
| Vrad06G0017000.1 | Alkaloid | PMT | low | borderline |
| Vrad07G0014910.1 | Alkaloid | PMT | medium | borderline |
| Vrad08G0000050.1 | Alkaloid | PMT | medium | pass |
| Vrad09G0000380.1 | Alkaloid | PMT | medium | pass |
| Vradscaffold_1460003980.1 | Alkaloid | PMT | medium | pass |
| Vradscaffold_1580006110.1 | Alkaloid | PMT | low | borderline |
| Vradscaffold_1670007830.1 | Alkaloid | PMT | medium | borderline |
| Vradscaffold_1830009660.1 | Alkaloid | PMT | medium | borderline |
| Vradscaffold_3150022710.1 | Alkaloid | PMT | medium | pass |
| Vradscaffold_730036890.1 | Alkaloid | PMT | medium | borderline |
| Vrad01G0008700.1 | Alkaloid | PYKS | low | borderline |
| Vrad02G0002100.1 | Alkaloid | PYKS | medium | pass |
| Vrad02G0005260.1 | Alkaloid | PYKS | low | borderline |
| Vrad02G0013330.1 | Alkaloid | PYKS | low | borderline |
| Vrad04G0004600.1 | Alkaloid | PYKS | high | pass |
| Vrad04G0005770.1 | Alkaloid | PYKS | low | borderline |
| Vrad05G0000430.1 | Alkaloid | PYKS | low | borderline |
| Vrad05G0000940.1 | Alkaloid | PYKS | low | borderline |
| Vrad05G0011240.1 | Alkaloid | PYKS | low | borderline |
| Vrad06G0015880.1 | Alkaloid | PYKS | low | borderline |
| Vrad07G0008030.1 | Alkaloid | PYKS | high | pass |
| Vrad07G0008690.1 | Alkaloid | PYKS | high | pass |
| Vrad07G0019840.1 | Alkaloid | PYKS | low | borderline |
| Vrad08G0000150.1 | Alkaloid | PYKS | low | borderline |
| Vrad08G0014530.1 | Alkaloid | PYKS | low | borderline |
| Vrad08G0021380.1 | Alkaloid | PYKS | low | borderline |
| Vrad10G0010840.1 | Alkaloid | PYKS | low | borderline |
| Vrad10G0012840.1 | Alkaloid | PYKS | low | borderline |
| Vrad10G0012900.1 | Alkaloid | PYKS | low | borderline |
| Vrad11G0012610.1 | Alkaloid | PYKS | low | borderline |
| Vradscaffold_1670007670.1 | Alkaloid | PYKS | high | pass |
| Vradscaffold_1840010410.1 | Alkaloid | PYKS | medium | pass |
| Vradscaffold_2090012470.1 | Alkaloid | PYKS | high | pass |
| Vradscaffold_2890020800.1 | Alkaloid | PYKS | medium | pass |
| Vradscaffold_70035600.1 | Alkaloid | PYKS | high | pass |
| Vrad01G0005010.1 | Alkaloid | SGD | low | borderline |
| Vrad02G0004240.1 | Alkaloid | SGD | medium | pass |
| Vrad02G0004250.1 | Alkaloid | SGD | medium | pass |
| Vrad02G0014170.1 | Alkaloid | SGD | medium | pass |
| Vrad02G0014190.1 | Alkaloid | SGD | medium | pass |