PlantSME Plant secondary metabolism enzyme database

Vigna umbellata (vigna_umbellata)

Imported from atlas release summary for Vigna umbellata.

1856
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.91% Alkaloid pathway 23.6% Phenylpropanoid pathway 21.23% Flavonoid pathway 12.66% Rosmarinic acid pathway 8.57% Steroid pathway 6.03%
Family Distribution
BAHD 6.43% C3'H/CYP98A 5.49% C4H 5.03% POD 4.54% 4CL 4.29% UGT 3.9% 7DLGT 3.67% UFGT 3.64%
Other Families 63.02%
More Families (97)
CYP76 152 3.5% IFS 150 3.46% F3H 149 3.44% T3O 136 3.14% NMT 125 2.88% DWF4/CYP90B1 97 2.24% F3'H/CYP75B 92 2.12% STR 80 1.84% CAD 80 1.84% BR6OX2/CYP85A2 74 1.71% H6H 73 1.68% CODM/T6ODM 69 1.59% TRI/TRII 67 1.54% SMT1/SMT2/SMT3 66 1.52% CYP71 57 1.31% SGD 53 1.22% ANR 50 1.15% CAS 48 1.11% IFR 44 1.01% HCT 41 0.95% GS 39 0.9% LAC 39 0.9% BBE 36 0.83% CSE 36 0.83% RAS 36 0.83% PYKS 35 0.81% CYP90D1 35 0.81% PAL 33 0.76% COMT 32 0.74% CCR 31 0.71% PMT 28 0.65% G8O/G8H 26 0.6% GES 25 0.58% COR 25 0.58% TPS 25 0.58% 7DLH 24 0.55% NCS 23 0.53% IO 23 0.53% SLS 23 0.53% F5H/CYP84A 23 0.53% TAT 21 0.48% T16H 20 0.46% FNS 20 0.46% 16OMT 18 0.42% 8HGO 16 0.37% LAMT 16 0.37% ROT3/CYP90C1 16 0.37% BR6OX1/CYP85A1 14 0.32% DET2 14 0.32% MPO 13 0.3% TDC 13 0.3% DFR 13 0.3% CPD/CYP90A1 13 0.3% SQE 13 0.3% CNMT 12 0.28% CHS 12 0.28% CYP51G1 12 0.28% F3'5'H/CYP75A 11 0.25% HPPR 10 0.23% SQS/FDFT1 10 0.23% CYP80B1 9 0.21% CCoAOMT 9 0.21% AACT 9 0.21% CPR 8 0.18% FPPS 8 0.18% DXS 8 0.18% CYP719 7 0.16% HMGR 7 0.16% GGPPS 7 0.16% SMO1/SMO2 6 0.14% MVD 6 0.14% ISY 5 0.12% ANS/LDOX 5 0.12% MCT/IspD 5 0.12% MVK 5 0.12% CHI 4 0.09% HMGS 4 0.09% TYDC_DDC 3 0.07% DWF1 3 0.07% DWF7 3 0.07% CMK/IspE 3 0.07% 6OMT_4OMT_SOMT 2 0.05% FLS 2 0.05% CPI1 2 0.05% HYD1 2 0.05% PMK 2 0.05% DXR 2 0.05% XMT_MXMT_DXMT 1 0.02% ODC 1 0.02% ADC 1 0.02% CYP80F1 1 0.02% DWF5 1 0.02% FK 1 0.02% MDS/IspF 1 0.02% HDR/IspH 1 0.02% IDI 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 518 19 BAHD (228) View species results
Alkaloid pathway 438 19 7DLGT (70) View species results
Phenylpropanoid pathway 394 11 POD (185) View species results
Flavonoid pathway 235 8 UFGT (150) View species results
Rosmarinic acid pathway 159 7 C4H (68) View species results
Steroid pathway 112 12 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1471 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 356 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HPPR
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Gene Pathway Family Confidence Status Best Target
vigna_umbellata_XP_047152380.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047152381.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047152727.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047152728.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047152729.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047152730.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047152731.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047177404.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047180362.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
vigna_umbellata_XP_047180363.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU