Vitis berlandieri x rupestris (vitis_berlandieri_x_rupestris)
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Imported from atlas release summary for Vitis berlandieri x rupestris.
2311
Candidate Protein Records
2178
Pathway-Level Records
5572
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5572
Family-Level Calls
C4H
8.56%
C3'H/CYP98A
7.02%
CYP76
5.53%
IFS
5.28%
UGT
4.11%
BAHD
3.93%
7DLGT
3.84%
T3O
3.82%
Other Families
57.91%
More Families (97)
UFGT
213
3.82%
DWF4/CYP90B1
144
2.58%
F3H
135
2.42%
POD
134
2.4%
BR6OX2/CYP85A2
117
2.1%
CAD
115
2.06%
4CL
111
1.99%
F3'H/CYP75B
110
1.97%
T16H
108
1.94%
STR
89
1.6%
LAC
85
1.53%
CODM/T6ODM
81
1.45%
CAS
80
1.44%
NMT
78
1.4%
PYKS
71
1.27%
TPS
71
1.27%
GES
65
1.17%
IO
57
1.02%
PAL
57
1.02%
SMT1/SMT2/SMT3
56
1.01%
FNS
51
0.92%
CHS
50
0.9%
CYP71
50
0.9%
H6H
49
0.88%
CYP90D1
48
0.86%
TRI/TRII
47
0.84%
HCT
43
0.77%
GS
41
0.74%
COMT
40
0.72%
IFR
39
0.7%
TAT
39
0.7%
G8O/G8H
38
0.68%
F3'5'H/CYP75A
35
0.63%
CPD/CYP90A1
35
0.63%
ANR
34
0.61%
16OMT
31
0.56%
SGD
28
0.5%
7DLH
28
0.5%
BBE
27
0.48%
RAS
27
0.48%
PMT
26
0.47%
CYP51G1
26
0.47%
COR
23
0.41%
NCS
23
0.41%
CSE
23
0.41%
LAMT
22
0.39%
SLS
22
0.39%
CCR
22
0.39%
DFR
19
0.34%
BR6OX1/CYP85A1
19
0.34%
F5H/CYP84A
18
0.32%
CYP80B1
16
0.29%
CPR
14
0.25%
CCoAOMT
13
0.23%
8HGO
12
0.22%
CNMT
11
0.2%
TYDC_DDC
11
0.2%
ROT3/CYP90C1
10
0.18%
CYP719
9
0.16%
DXS
9
0.16%
MPO
8
0.14%
AACT
8
0.14%
ADC
7
0.13%
ISY
6
0.11%
GGPPS
6
0.11%
TDC
5
0.09%
HPPR
5
0.09%
SQS/FDFT1
5
0.09%
SQE
5
0.09%
DWF7
4
0.07%
SMO1/SMO2
4
0.07%
DET2
4
0.07%
HDR/IspH
4
0.07%
FPPS
4
0.07%
ODC
3
0.05%
6OMT_4OMT_SOMT
3
0.05%
ANS/LDOX
3
0.05%
CHI
3
0.05%
DWF1
3
0.05%
IDI
3
0.05%
HMGS
3
0.05%
HMGR
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
XMT_MXMT_DXMT
2
0.04%
DWF5
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 578 | 20 | UGT (221) | View species results |
| Alkaloid pathway | 506 | 23 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 406 | 12 | POD (129) | View species results |
| Flavonoid pathway | 325 | 8 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 239 | 7 | C4H (133) | View species results |
| Steroid pathway | 124 | 12 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 289 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117110.p01 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g117590.p01 | Terpenoid | UGT | medium | pass | UGT__00116__sp_U3UA11_UGT7_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g121040.p01 | Terpenoid | UGT | medium | pass | UGT__00002__sp_A0A067YBQ3_UGT13_PUEML |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g121060.p01 | Terpenoid | UGT | medium | pass | UGT__00013__sp_A0A172J2D0_UGT2_PUEML |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g121070.p01 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr09.ver1.0.g127400.p01 | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr09.ver1.0.g132220.p01 | Terpenoid | UGT | medium | pass | UGT__00046__sp_K4GMD6_73C9_BARVU |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr09.ver1.0.g132250.p01 | Terpenoid | UGT | medium | pass | UGT__00046__sp_K4GMD6_73C9_BARVU |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g150200.p01 | Terpenoid | UGT | medium | pass | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g150210.p01 | Terpenoid | UGT | low | borderline | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g150220.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g150230.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g150240.p01 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g159890.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g159900.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g159930.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g159940.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr11.ver1.0.g159950.p01 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169380.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169390.p01 | Terpenoid | UGT | medium | pass | UGT__00051__sp_O23382_U71B5_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169400.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169410.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169420.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169430.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169440.p01 | Terpenoid | UGT | medium | pass | UGT__00097__sp_Q9LSY9_U71B1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169450.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169470.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169530.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169550.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169560.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169570.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169580.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169600.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169610.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169620.p01 | Terpenoid | UGT | medium | pass | UGT__00028__sp_D3UAG1_U7A16_PYRCO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g169640.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g170720.p01 | Terpenoid | UGT | medium | pass | UGT__00026__sp_D3THI6_U7A15_MALDO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179160.p01 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179170.p01 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179180.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179210.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179220.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179260.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179270.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g179340.p01 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g182090.p01 | Terpenoid | UGT | medium | pass | UGT__00064__sp_P0DO71_GT941_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g182100.p01 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g182110.p01 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr13.ver1.0.g185730.p01 | Terpenoid | UGT | medium | pass | UGT__00064__sp_P0DO71_GT941_SIRGR |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr14.ver1.0.g200020.p01 | Terpenoid | UGT | medium | pass | UGT__00102__sp_Q9LZD8_U89A2_ARATH |