Vitis berlandieri x rupestris (vitis_berlandieri_x_rupestris)
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Imported from atlas release summary for Vitis berlandieri x rupestris.
2311
Candidate Protein Records
2178
Pathway-Level Records
5572
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5572
Family-Level Calls
C4H
8.56%
C3'H/CYP98A
7.02%
CYP76
5.53%
IFS
5.28%
UGT
4.11%
BAHD
3.93%
7DLGT
3.84%
T3O
3.82%
Other Families
57.91%
More Families (97)
UFGT
213
3.82%
DWF4/CYP90B1
144
2.58%
F3H
135
2.42%
POD
134
2.4%
BR6OX2/CYP85A2
117
2.1%
CAD
115
2.06%
4CL
111
1.99%
F3'H/CYP75B
110
1.97%
T16H
108
1.94%
STR
89
1.6%
LAC
85
1.53%
CODM/T6ODM
81
1.45%
CAS
80
1.44%
NMT
78
1.4%
PYKS
71
1.27%
TPS
71
1.27%
GES
65
1.17%
IO
57
1.02%
PAL
57
1.02%
SMT1/SMT2/SMT3
56
1.01%
FNS
51
0.92%
CHS
50
0.9%
CYP71
50
0.9%
H6H
49
0.88%
CYP90D1
48
0.86%
TRI/TRII
47
0.84%
HCT
43
0.77%
GS
41
0.74%
COMT
40
0.72%
IFR
39
0.7%
TAT
39
0.7%
G8O/G8H
38
0.68%
F3'5'H/CYP75A
35
0.63%
CPD/CYP90A1
35
0.63%
ANR
34
0.61%
16OMT
31
0.56%
SGD
28
0.5%
7DLH
28
0.5%
BBE
27
0.48%
RAS
27
0.48%
PMT
26
0.47%
CYP51G1
26
0.47%
COR
23
0.41%
NCS
23
0.41%
CSE
23
0.41%
LAMT
22
0.39%
SLS
22
0.39%
CCR
22
0.39%
DFR
19
0.34%
BR6OX1/CYP85A1
19
0.34%
F5H/CYP84A
18
0.32%
CYP80B1
16
0.29%
CPR
14
0.25%
CCoAOMT
13
0.23%
8HGO
12
0.22%
CNMT
11
0.2%
TYDC_DDC
11
0.2%
ROT3/CYP90C1
10
0.18%
CYP719
9
0.16%
DXS
9
0.16%
MPO
8
0.14%
AACT
8
0.14%
ADC
7
0.13%
ISY
6
0.11%
GGPPS
6
0.11%
TDC
5
0.09%
HPPR
5
0.09%
SQS/FDFT1
5
0.09%
SQE
5
0.09%
DWF7
4
0.07%
SMO1/SMO2
4
0.07%
DET2
4
0.07%
HDR/IspH
4
0.07%
FPPS
4
0.07%
ODC
3
0.05%
6OMT_4OMT_SOMT
3
0.05%
ANS/LDOX
3
0.05%
CHI
3
0.05%
DWF1
3
0.05%
IDI
3
0.05%
HMGS
3
0.05%
HMGR
3
0.05%
MVK
3
0.05%
MVD
3
0.05%
XMT_MXMT_DXMT
2
0.04%
DWF5
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
CYP80F1
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
FK
1
0.02%
CPI1
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 578 | 20 | UGT (221) | View species results |
| Alkaloid pathway | 506 | 23 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 406 | 12 | POD (129) | View species results |
| Flavonoid pathway | 325 | 8 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 239 | 7 | C4H (133) | View species results |
| Steroid pathway | 124 | 12 | CAS (70) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2574 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 289 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr15.ver1.0.g215600.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr15.ver1.0.g216560.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g224380.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g224390.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g227010.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g228560.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g233930.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g249630.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g249650.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g251170.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00001__sp_D4N500_DIOX1_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g273200.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g273210.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g279700.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr19.ver1.0.g279710.p01 | Alkaloid | CODM/T6ODM | medium | borderline | CODM_T6ODM__00002__sp_D4N502_DIOX3_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005690.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005700.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005730.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005740.p01 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005750.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005760.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g005770.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g011510.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr03.ver1.0.g027120.p01 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g056460.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g056470.p01 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g056480.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr05.ver1.0.g065920.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g109030.p01 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g113710.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g113720.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g113730.p01 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g113740.p01 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr08.ver1.0.g113750.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr12.ver1.0.g160940.p01 | Alkaloid | COR | low | borderline | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g225510.p01 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g253430.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g253440.p01 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g009800.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00007__sp_L7T720_C719A_PODPE |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g103170.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00003__sp_B1NF19_C719D_ARGME |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr07.ver1.0.g103190.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr10.ver1.0.g143180.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g221020.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g221140.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g221240.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00004__sp_B1NF20_C719E_ARGME |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr16.ver1.0.g229280.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00004__sp_B1NF20_C719E_ARGME |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr18.ver1.0.g255220.p01 | Alkaloid | CYP719 | medium | borderline | CYP719__00009__sp_Q50LH3_C7192_ESCCA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr01.ver1.0.g013470.p01 | Alkaloid | CYP80B1 | medium | borderline | CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr02.ver1.0.g017300.p01 | Alkaloid | CYP80B1 | medium | borderline | CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr02.ver1.0.g018670.p01 | Alkaloid | CYP80B1 | medium | borderline | CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA |
| vitis_berlandieri_x_rupestris_VITVix110R_v1.0.hap_Vbe.chr06.ver1.0.g081720.p01 | Alkaloid | CYP80B1 | medium | borderline | CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA |