PlantSME Plant secondary metabolism enzyme database

Zizania palustris (zizania_palustris)

Imported from atlas release summary for Zizania palustris.

2547
Candidate Protein Records
2011
Pathway-Level Records
4664
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 27.5% Phenylpropanoid pathway 24.12% Alkaloid pathway 20.44% Flavonoid pathway 12.03% Rosmarinic acid pathway 8.25% Steroid pathway 7.66%
Family Distribution
BAHD 7.25% POD 5.79% C3'H/CYP98A 5.34% C4H 4.63% 4CL 4.31% UGT 3.24% NMT 3.09% IFS 3.0%
Other Families 63.36%
More Families (98)
UFGT 133 2.85% 7DLGT 131 2.81% CYP76 125 2.68% T3O 121 2.59% STR 110 2.36% SMT1/SMT2/SMT3 107 2.29% DWF4/CYP90B1 106 2.27% F3H 100 2.14% F3'H/CYP75B 95 2.04% BR6OX2/CYP85A2 80 1.72% CAD 76 1.63% CYP71 65 1.39% CSE 63 1.35% CAS 61 1.31% IFR 59 1.27% GES 57 1.22% TPS 57 1.22% CODM/T6ODM 51 1.09% PYKS 49 1.05% GS 48 1.03% CCR 48 1.03% SGD 46 0.99% H6H 45 0.96% ANR 45 0.96% PAL 45 0.96% RAS 44 0.94% LAC 43 0.92% PMT 40 0.86% SLS 37 0.79% T16H 34 0.73% TRI/TRII 33 0.71% 8HGO 32 0.69% G8O/G8H 32 0.69% HCT 32 0.69% CYP90D1 32 0.69% NCS 31 0.66% COMT 29 0.62% 16OMT 27 0.58% IO 26 0.56% 7DLH 26 0.56% DFR 26 0.56% CHS 23 0.49% CPD/CYP90A1 23 0.49% FNS 22 0.47% COR 21 0.45% F3'5'H/CYP75A 21 0.45% CNMT 18 0.39% TAT 18 0.39% CYP51G1 18 0.39% CPR 17 0.36% BR6OX1/CYP85A1 17 0.36% BBE 16 0.34% CCoAOMT 16 0.34% LAMT 14 0.3% SQS/FDFT1 14 0.3% FPPS 14 0.3% F5H/CYP84A 13 0.28% AACT 12 0.26% CYP719 11 0.24% CHI 11 0.24% MCT/IspD 11 0.24% MVK 10 0.21% HMGR 10 0.21% GGPPS 10 0.21% ANS/LDOX 9 0.19% HMGS 9 0.19% TDC 8 0.17% CYP80B1 8 0.17% HPPR 8 0.17% ROT3/CYP90C1 8 0.17% MVD 8 0.17% TYDC_DDC 7 0.15% XMT_MXMT_DXMT 7 0.15% DWF1 6 0.13% SMO1/SMO2 6 0.13% DXS 6 0.13% DET2 5 0.11% SQE 5 0.11% MDS/IspF 5 0.11% IDI 5 0.11% 6OMT_4OMT_SOMT 4 0.09% MPO 4 0.09% HDS/IspG 4 0.09% ADC 3 0.06% DXR 3 0.06% CMK/IspE 3 0.06% ODC 2 0.04% FLS 2 0.04% FK 2 0.04% HYD1 2 0.04% CPI1 2 0.04% ISY 1 0.02% CYP80F1 1 0.02% DWF7 1 0.02% DWF5 1 0.02% GPPS 1 0.02% PMK 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 553 20 BAHD (245) View species results
Phenylpropanoid pathway 485 11 POD (238) View species results
Alkaloid pathway 411 24 NMT (78) View species results
Flavonoid pathway 242 11 UFGT (123) View species results
Rosmarinic acid pathway 166 7 C4H (63) View species results
Steroid pathway 154 14 SMT1/SMT2/SMT3 (64) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1504 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 414 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
KAG8098939.1[Zizania Rosmarinic Acid C4H low borderline
KAG8098940.1[Zizania Rosmarinic Acid C4H low borderline
KAG8098943.1[Zizania Rosmarinic Acid C4H low borderline
KAG8098945.1[Zizania Rosmarinic Acid C4H low borderline
KAG8099087.1[Zizania Rosmarinic Acid C4H low borderline
KAG8100099.1[Zizania Rosmarinic Acid C4H medium pass
KAG8100957.1[Zizania Rosmarinic Acid C4H medium pass
KAG8100959.1[Zizania Rosmarinic Acid C4H low borderline