PlantSME Plant secondary metabolism enzyme database
HMGR

HMGR

Atlas summary family HMGR.

Lineage Coverage
Detected in 756 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Pinus taeda
Fragaria ananassa
Abies alba
Brassica carinata
Related Modules
Terpenoid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Terpenoid pathway 3794 current-family members Bergman et al. 2024; Karunanithi & Zerbe 2019; Zhang et al. 2023; Lu et al. 2023; Moghe et al. 2023
MVA precursor branch
AACT 337 HMGS 2158 HMGR 3794 MVK 1409 PMK 1501 MVD 1588
MEP precursor branch
DXS 4421 DXR 1551 MCT/IspD 1192 CMK/IspE 1150 MDS/IspF 1197 HDS/IspG 1612 HDR/IspH 1720
IPP/DMAPP and prenyl diphosphate extension
IDI 1579 GPPS 135 FPPS 5839 GGPPS 100
Skeleton formation and tailoring
TPS 36208 CYP71 13248 CYP76 46690 UGT 123661 BAHD 149019
Family Gene List
GeneSpeciesProtein ID
fragaria_chiloensis_augustus_masked-2D-processed-gene-71.24-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-2D-processed-gene-71.24-mRNA-1
fragaria_chiloensis_augustus_masked-2D-processed-gene-72.1-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-2D-processed-gene-72.1-mRNA-1
fragaria_chiloensis_augustus_masked-2D-processed-gene-72.2-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-2D-processed-gene-72.2-mRNA-1
fragaria_chiloensis_augustus_masked-2D-processed-gene-72.3-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-2D-processed-gene-72.3-mRNA-1
fragaria_chiloensis_augustus_masked-2D-processed-gene-72.5-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-2D-processed-gene-72.5-mRNA-1
fragaria_chiloensis_augustus_masked-5D-processed-gene-152.4-mRNA-1 fragaria_chiloensis fragaria_chiloensis_augustus_masked-5D-processed-gene-152.4-mRNA-1
fragaria_chiloensis_maker-1A-augustus-gene-52.139-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1A-augustus-gene-52.139-mRNA-1
fragaria_chiloensis_maker-1B-augustus-gene-51.41-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1B-augustus-gene-51.41-mRNA-1
fragaria_chiloensis_maker-1C-augustus-gene-43.47-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1C-augustus-gene-43.47-mRNA-1
fragaria_chiloensis_maker-1C-exonerate_est2genome-gene-21.15-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1C-exonerate_est2genome-gene-21.15-mRNA-1
fragaria_chiloensis_maker-1D-augustus-gene-215.7-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1D-augustus-gene-215.7-mRNA-1
fragaria_chiloensis_maker-1D-exonerate_est2genome-gene-237.8-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-1D-exonerate_est2genome-gene-237.8-mRNA-1
fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-145.11-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-145.11-mRNA-1
fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-145.55-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-145.55-mRNA-1
fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-146.10-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-146.10-mRNA-1
fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-146.25-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-146.25-mRNA-1
fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-146.40-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2A-exonerate_protein2genome-gene-146.40-mRNA-1
fragaria_chiloensis_maker-2B-exonerate_protein2genome-gene-141.33-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2B-exonerate_protein2genome-gene-141.33-mRNA-1
fragaria_chiloensis_maker-2B-exonerate_protein2genome-gene-141.52-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2B-exonerate_protein2genome-gene-141.52-mRNA-1
fragaria_chiloensis_maker-2B-exonerate_protein2genome-gene-142.8-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2B-exonerate_protein2genome-gene-142.8-mRNA-1
fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-156.42-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-156.42-mRNA-1
fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-157.0-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-157.0-mRNA-1
fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-157.15-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-157.15-mRNA-1
fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-157.30-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2C-exonerate_protein2genome-gene-157.30-mRNA-1
fragaria_chiloensis_maker-5A-augustus-gene-154.14-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5A-augustus-gene-154.14-mRNA-1
fragaria_chiloensis_maker-5B-augustus-gene-121.53-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5B-augustus-gene-121.53-mRNA-1
fragaria_chiloensis_maker-5C-augustus-gene-175.0-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5C-augustus-gene-175.0-mRNA-1
fragaria_chiloensis_maker-5D-augustus-gene-152.54-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-5D-augustus-gene-152.54-mRNA-1
fragaria_iinumae_evm.model.scaf_13.494 fragaria_iinumae fragaria_iinumae_evm.model.scaf_13.494
fragaria_iinumae_evm.model.scaf_14.1123 fragaria_iinumae fragaria_iinumae_evm.model.scaf_14.1123