PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
PITA_000000285-RA Alkaloid 16OMT medium borderline
PITA_000003103-RA Alkaloid 16OMT medium borderline
PITA_000003507-RA Alkaloid 16OMT medium borderline
PITA_000004376-RA Alkaloid 16OMT low borderline
PITA_000005315-RA Alkaloid 16OMT low borderline
PITA_000007137-RA Alkaloid 16OMT medium borderline
PITA_000007852-RA Alkaloid 16OMT low borderline
PITA_000010263-RA Alkaloid 16OMT medium borderline
PITA_000011008-RA Alkaloid 16OMT medium borderline
PITA_000015038-RA Alkaloid 16OMT medium borderline
PITA_000021955-RA Alkaloid 16OMT medium borderline
PITA_000026041-RA Alkaloid 16OMT low borderline
PITA_000026137-RA Alkaloid 16OMT low borderline
PITA_000026540-RA Alkaloid 16OMT medium borderline
PITA_000028631-RA Alkaloid 16OMT medium borderline
PITA_000030785-RA Alkaloid 16OMT medium borderline
PITA_000031828-RA Alkaloid 16OMT medium borderline
PITA_000031896-RA Alkaloid 16OMT low borderline
PITA_000031948-RA Alkaloid 16OMT medium borderline
PITA_000033438-RA Alkaloid 16OMT low borderline
PITA_000033941-RA Alkaloid 16OMT medium borderline
PITA_000034772-RA Alkaloid 16OMT medium borderline
PITA_000035855-RA Alkaloid 16OMT medium borderline
PITA_000036158-RA Alkaloid 16OMT medium borderline
PITA_000037600-RA Alkaloid 16OMT medium borderline
PITA_000038536-RA Alkaloid 16OMT medium borderline
PITA_000041019-RA Alkaloid 16OMT medium borderline
PITA_000041688-RA Alkaloid 16OMT medium borderline
PITA_000042183-RA Alkaloid 16OMT medium borderline
PITA_000044408-RA Alkaloid 16OMT low borderline
PITA_000044814-RA Alkaloid 16OMT medium borderline
PITA_000044817-RA Alkaloid 16OMT medium borderline
PITA_000045412-RA Alkaloid 16OMT medium borderline
PITA_000046444-RA Alkaloid 16OMT medium borderline
PITA_000046941-RA Alkaloid 16OMT low borderline
PITA_000047466-RA Alkaloid 16OMT medium borderline
PITA_000051685-RA Alkaloid 16OMT low borderline
PITA_000051996-RA Alkaloid 16OMT medium borderline
PITA_000052262-RA Alkaloid 16OMT medium borderline
PITA_000054916-RA Alkaloid 16OMT medium borderline
PITA_000055758-RA Alkaloid 16OMT medium borderline
PITA_000058465-RA Alkaloid 16OMT medium borderline
PITA_000060469-RA Alkaloid 16OMT medium borderline
PITA_000065707-RA Alkaloid 16OMT medium borderline
PITA_000067887-RA Alkaloid 16OMT medium borderline
PITA_000069027-RA Alkaloid 16OMT medium borderline
PITA_000070683-RA Alkaloid 16OMT medium borderline
PITA_000071447-RA Alkaloid 16OMT medium borderline
PITA_000071685-RA Alkaloid 16OMT medium borderline
PITA_000071851-RA Alkaloid 16OMT medium borderline