Pinus taeda (pinus_taeda)
Imported from atlas release summary for Pinus taeda.
5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
5262
Candidate Genes
C4H
5.65%
C3'H/CYP98A
5.17%
UGT
4.84%
4CL
4.56%
CYP76
4.22%
BAHD
4.21%
POD
4.18%
7DLGT
3.84%
Other Families
63.32%
More Families (98)
UFGT
426
3.36%
IFS
424
3.34%
TPS
369
2.91%
F3H
301
2.37%
DWF4/CYP90B1
292
2.3%
CAD
273
2.15%
GES
258
2.03%
F3'H/CYP75B
253
1.99%
CAS
239
1.88%
BR6OX2/CYP85A2
234
1.84%
G8O/G8H
232
1.83%
LAC
227
1.79%
T3O
208
1.64%
H6H
200
1.58%
IFR
189
1.49%
T16H
183
1.44%
CODM/T6ODM
181
1.43%
IO
156
1.23%
NMT
151
1.19%
F3'5'H/CYP75A
138
1.09%
TRI/TRII
135
1.06%
SGD
134
1.06%
COMT
128
1.01%
HCT
118
0.93%
PAL
117
0.92%
STR
98
0.77%
SMT1/SMT2/SMT3
98
0.77%
FNS
96
0.76%
F5H/CYP84A
94
0.74%
PYKS
92
0.72%
8HGO
89
0.7%
7DLH
89
0.7%
RAS
85
0.67%
GS
84
0.66%
16OMT
80
0.63%
PMT
76
0.6%
SLS
75
0.59%
ANR
74
0.58%
HMGR
74
0.58%
ANS/LDOX
73
0.58%
DFR
69
0.54%
CYP90D1
69
0.54%
CHS
67
0.53%
CCR
64
0.5%
LAMT
60
0.47%
NCS
59
0.46%
CSE
54
0.43%
TAT
50
0.39%
CPD/CYP90A1
47
0.37%
GGPPS
43
0.34%
BR6OX1/CYP85A1
41
0.32%
CYP80B1
39
0.31%
ISY
38
0.3%
BBE
34
0.27%
CYP71
31
0.24%
XMT_MXMT_DXMT
28
0.22%
ADC
26
0.2%
ODC
24
0.19%
CHI
24
0.19%
FPPS
24
0.19%
CYP719
23
0.18%
COR
22
0.17%
6OMT_4OMT_SOMT
19
0.15%
CCoAOMT
18
0.14%
ROT3/CYP90C1
18
0.14%
CNMT
17
0.13%
MPO
15
0.12%
FLS
15
0.12%
DWF1
13
0.1%
DET2
12
0.09%
AACT
12
0.09%
CYP51G1
10
0.08%
CPR
9
0.07%
HDS/IspG
9
0.07%
IDI
9
0.07%
MVK
8
0.06%
HPPR
7
0.06%
DWF5
7
0.06%
CYP80F1
6
0.05%
CMK/IspE
6
0.05%
DXS
6
0.05%
TDC
4
0.03%
SQS/FDFT1
4
0.03%
SQE
4
0.03%
HYD1
3
0.02%
CPI1
3
0.02%
HDR/IspH
3
0.02%
HMGS
3
0.02%
MVD
3
0.02%
FK
2
0.02%
SMO1/SMO2
2
0.02%
DWF7
2
0.02%
DXR
2
0.02%
PMK
2
0.02%
MDS/IspF
2
0.02%
TYDC_DDC
1
0.01%
MCT/IspD
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1469 | 18 | UGT (484) | View species results |
| Phenylpropanoid pathway | 1259 | 13 | POD (460) | View species results |
| Alkaloid pathway | 1046 | 30 | 7DLGT (246) | View species results |
| Flavonoid pathway | 799 | 16 | UFGT (341) | View species results |
| Rosmarinic acid pathway | 408 | 7 | 4CL (161) | View species results |
| Steroid pathway | 281 | 16 | CAS (195) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4571 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 737 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| 3A_all_VO_L_29631_T_11/24|m.29909.mrna2 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000000014-RA | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| PITA_000000024-RA | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| PITA_000000041-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000000065-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000000955-RA | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| PITA_000000964-RA | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| PITA_000002200-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000002516-RA | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| PITA_000003174-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000003432-RA | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| PITA_000003611-RA | Phenylpropanoid | POD | low | borderline | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| PITA_000004614-RA | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| PITA_000006883-RA | Phenylpropanoid | POD | low | borderline | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| PITA_000006884-RA | Phenylpropanoid | POD | low | borderline | POD__00008__sp_P52574_REHY_SYNRU |
| PITA_000007028-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000007029-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000007030-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000007061-RA | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| PITA_000007252-RA | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| PITA_000007375-RA | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000007376-RA | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000007550-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000007786-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000007862-RA | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| PITA_000007864-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000008331-RA | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| PITA_000008713-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000008714-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000008719-RA | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000009670-RA | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000009671-RA | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000009673-RA | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000009675-RA | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000009981-RA | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000010387-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000011032-RA | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| PITA_000011624-RA | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| PITA_000011652-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000011656-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000011657-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000011738-RA | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| PITA_000011834-RA | Phenylpropanoid | POD | low | borderline | POD__00006__sp_O22850_GPX3_ARATH |
| PITA_000011969-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000011971-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| PITA_000012416-RA | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000012532-RA | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| PITA_000012682-RA | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| PITA_000013129-RA | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| PITA_000013130-RA | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |