PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status Best Target
1A_I3_VO_L_10088_T_4/4|m.8296.mrna1 Rosmarinic Acid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
1A_all_VO_L_10279_T_6/7|m.2355.mrna1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000000627-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000000628-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000000651-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000000653-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000001065-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000002470-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000002644-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000003730-RA Rosmarinic Acid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
PITA_000003990-RA Rosmarinic Acid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
PITA_000004884-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000004992-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000005558-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000006961-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000007264-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000007266-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000007267-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000007379-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000008745-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000009307-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000009376-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000009377-RA Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
PITA_000010722-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000012257-RA Rosmarinic Acid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
PITA_000014427-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000016722-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000017579-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000017580-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000017581-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000017582-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000018034-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000018134-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000018381-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000018735-RA Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
PITA_000019235-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000019774-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000021919-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000022572-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000023184-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000023251-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000023672-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000025400-RA Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
PITA_000026705-RA Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
PITA_000027749-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000027750-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000028138-RA Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
PITA_000030253-RA Rosmarinic Acid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000031184-RA Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
PITA_000031291-RA Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU