PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DWF4/CYP90B1
Reset
Gene Pathway Family Confidence Status
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Steroid DWF4/CYP90B1 low borderline
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Steroid DWF4/CYP90B1 low borderline
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Steroid DWF4/CYP90B1 low borderline
PITA_000000727-RA Steroid DWF4/CYP90B1 low borderline
PITA_000000975-RA Steroid DWF4/CYP90B1 low borderline
PITA_000002570-RA Steroid DWF4/CYP90B1 low borderline
PITA_000002642-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000002872-RA Steroid DWF4/CYP90B1 low borderline
PITA_000003109-RA Steroid DWF4/CYP90B1 low borderline
PITA_000004871-RA Steroid DWF4/CYP90B1 low borderline
PITA_000004872-RA Steroid DWF4/CYP90B1 low borderline
PITA_000005612-RA Steroid DWF4/CYP90B1 low borderline
PITA_000006071-RA Steroid DWF4/CYP90B1 low borderline
PITA_000006072-RA Steroid DWF4/CYP90B1 low borderline
PITA_000006776-RA Steroid DWF4/CYP90B1 low borderline
PITA_000006872-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000006873-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000006874-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000007063-RA Steroid DWF4/CYP90B1 low borderline
PITA_000007203-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000007628-RA Steroid DWF4/CYP90B1 low borderline
PITA_000007754-RA Steroid DWF4/CYP90B1 low borderline
PITA_000008695-RA Steroid DWF4/CYP90B1 low borderline
PITA_000009191-RA Steroid DWF4/CYP90B1 low borderline
PITA_000010264-RA Steroid DWF4/CYP90B1 low borderline
PITA_000010799-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000011056-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000011385-RA Steroid DWF4/CYP90B1 low borderline
PITA_000011474-RA Steroid DWF4/CYP90B1 low borderline
PITA_000011482-RA Steroid DWF4/CYP90B1 low borderline
PITA_000011915-RA Steroid DWF4/CYP90B1 low borderline
PITA_000012113-RA Steroid DWF4/CYP90B1 low borderline
PITA_000014468-RA Steroid DWF4/CYP90B1 low borderline
PITA_000014937-RA Steroid DWF4/CYP90B1 low borderline
PITA_000015787-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000015914-RA Steroid DWF4/CYP90B1 low borderline
PITA_000019034-RA Steroid DWF4/CYP90B1 low borderline
PITA_000019693-RA Steroid DWF4/CYP90B1 low borderline
PITA_000019798-RA Steroid DWF4/CYP90B1 low borderline
PITA_000021078-RA Steroid DWF4/CYP90B1 low borderline
PITA_000021125-RA Steroid DWF4/CYP90B1 medium borderline
PITA_000022145-RA Steroid DWF4/CYP90B1 low borderline
PITA_000022232-RA Steroid DWF4/CYP90B1 low borderline
PITA_000022455-RA Steroid DWF4/CYP90B1 low borderline
PITA_000022456-RA Steroid DWF4/CYP90B1 low borderline
PITA_000023229-RA Steroid DWF4/CYP90B1 low borderline
PITA_000023499-RA Steroid DWF4/CYP90B1 low borderline
PITA_000024090-RA Steroid DWF4/CYP90B1 low borderline
PITA_000025076-RA Steroid DWF4/CYP90B1 low borderline
PITA_000025222-RA Steroid DWF4/CYP90B1 low borderline