PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ADC
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Gene Pathway Family Confidence Status Best Target
PITA_000014798-RA Alkaloid ADC medium pass ADC__00001__sp_A0A1S3WYR7_ADC1B_TOBAC
PITA_000021723-RA Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH
PITA_000025374-RA Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH
PITA_000025375-RA Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000032396-RA Alkaloid ADC medium pass ADC__00001__sp_A0A1S3WYR7_ADC1B_TOBAC
PITA_000037791-RA Alkaloid ADC low borderline ADC__00003__sp_O23141_SPE2_ARATH
PITA_000037792-RA Alkaloid ADC low borderline ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000040551-RA Alkaloid ADC low borderline ADC__00003__sp_O23141_SPE2_ARATH
PITA_000050763-RA Alkaloid ADC medium pass ADC__00001__sp_A0A1S3WYR7_ADC1B_TOBAC
PITA_000055554-RA Alkaloid ADC medium pass ADC__00003__sp_O23141_SPE2_ARATH
PITA_000055555-RA Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH
PITA_000059079-RA Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000059080-RA Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000059081-RA Alkaloid ADC low borderline ADC__00001__sp_A0A1S3WYR7_ADC1B_TOBAC
PITA_000059719-RA Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000060250-RA Alkaloid ADC medium pass ADC__00001__sp_A0A1S3WYR7_ADC1B_TOBAC
PITA_000060251-RA Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000063516-RA Alkaloid ADC low borderline ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000071934-RA Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH
PITA_000071935-RA Alkaloid ADC low borderline ADC__00004__sp_Q9SI64_SPE1_ARATH
PITA_000076597-RA Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH
PITA_000076599-RA Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000078777-RA Alkaloid ADC medium pass ADC__00003__sp_O23141_SPE2_ARATH
PITA_000082869-RA Alkaloid ADC low borderline ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC
PITA_000082964-RA Alkaloid ADC medium pass ADC__00001__sp_A0A1S3WYR7_ADC1B_TOBAC
PITA_000095114-RA Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH