PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
PITA_000000443-RA Terpenoid AACT low borderline
PITA_000027487-RA Terpenoid AACT medium borderline
PITA_000028160-RA Terpenoid AACT low borderline
PITA_000037356-RA Terpenoid AACT low borderline
PITA_000038946-RA Terpenoid AACT low borderline
PITA_000046911-RA Terpenoid AACT low borderline
PITA_000065718-RA Terpenoid AACT medium borderline
PITA_000084366-RA Terpenoid AACT medium borderline
PITA_000090067-RA Terpenoid AACT medium borderline
PITA_000095551-RA Terpenoid AACT medium borderline
PITAhm_000457-RA Terpenoid AACT medium borderline
PITAhm_001368-RA Terpenoid AACT low borderline
1A_I3_NT_comp45488_c0_seq2|m.6386.mrna1 Terpenoid BAHD low borderline
1A_I3_NT_comp51965_c0_seq1|m.6505.mrna1 Terpenoid BAHD medium pass
1A_I3_NT_comp51965_c0_seq1|m.6505.mrna2 Terpenoid BAHD medium pass
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Terpenoid BAHD medium pass
3A_I19_VO_L_1_T_198266/241978|m.35150.mrna2 Terpenoid BAHD medium pass
5A_I12_VO_L_66385_T_1/8|m.43996.mrna2 Terpenoid BAHD medium pass
5A_all_VO_L_2_T_125246/409051|m.38948.mrna1 Terpenoid BAHD medium pass
5A_all_VO_L_7271_T_6/9|m.41437.mrna1 Terpenoid BAHD medium pass
6A_I23_OT_comp39246_c0_seq1|m.58730.mrna1 Terpenoid BAHD medium pass
PITA_000000481-RA Terpenoid BAHD medium pass
PITA_000000482-RA Terpenoid BAHD low borderline
PITA_000000483-RA Terpenoid BAHD medium pass
PITA_000000833-RA Terpenoid BAHD medium pass
PITA_000000950-RA Terpenoid BAHD medium pass
PITA_000001005-RA Terpenoid BAHD medium pass
PITA_000001006-RA Terpenoid BAHD medium pass
PITA_000001273-RA Terpenoid BAHD medium pass
PITA_000001584-RA Terpenoid BAHD low borderline
PITA_000001800-RA Terpenoid BAHD medium pass
PITA_000001804-RA Terpenoid BAHD medium pass
PITA_000001901-RA Terpenoid BAHD low borderline
PITA_000002175-RA Terpenoid BAHD medium pass
PITA_000002181-RA Terpenoid BAHD low borderline
PITA_000002309-RA Terpenoid BAHD medium pass
PITA_000002833-RA Terpenoid BAHD low borderline
PITA_000002834-RA Terpenoid BAHD low borderline
PITA_000002844-RA Terpenoid BAHD medium pass
PITA_000002845-RA Terpenoid BAHD low borderline
PITA_000004008-RA Terpenoid BAHD medium pass
PITA_000004402-RA Terpenoid BAHD low borderline
PITA_000004915-RA Terpenoid BAHD medium pass
PITA_000004917-RA Terpenoid BAHD medium pass
PITA_000005133-RA Terpenoid BAHD low borderline
PITA_000005937-RA Terpenoid BAHD low borderline
PITA_000006100-RA Terpenoid BAHD medium pass
PITA_000006323-RA Terpenoid BAHD medium pass
PITA_000006671-RA Terpenoid BAHD medium pass
PITA_000007331-RA Terpenoid BAHD medium pass