PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP71
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Gene Pathway Family Confidence Status
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Terpenoid CYP71 medium borderline
PITA_000001146-RA Terpenoid CYP71 low borderline
PITA_000010044-RA Terpenoid CYP71 low borderline
PITA_000013272-RA Terpenoid CYP71 low borderline
PITA_000013864-RA Terpenoid CYP71 medium pass
PITA_000019139-RA Terpenoid CYP71 medium pass
PITA_000019325-RA Terpenoid CYP71 medium pass
PITA_000021230-RA Terpenoid CYP71 low borderline
PITA_000023557-RA Terpenoid CYP71 low borderline
PITA_000032241-RA Terpenoid CYP71 medium pass
PITA_000033427-RA Terpenoid CYP71 medium pass
PITA_000039553-RA Terpenoid CYP71 medium pass
PITA_000042889-RA Terpenoid CYP71 low borderline
PITA_000043556-RA Terpenoid CYP71 low borderline
PITA_000044847-RA Terpenoid CYP71 medium borderline
PITA_000051164-RA Terpenoid CYP71 low borderline
PITA_000058529-RA Terpenoid CYP71 medium pass
PITA_000059239-RA Terpenoid CYP71 low borderline
PITA_000059993-RA Terpenoid CYP71 medium pass
PITA_000067316-RA Terpenoid CYP71 medium pass
PITA_000069430-RA Terpenoid CYP71 medium pass
PITA_000072283-RA Terpenoid CYP71 low borderline
PITA_000072521-RA Terpenoid CYP71 medium pass
PITA_000072801-RA Terpenoid CYP71 medium pass
PITA_000074012-RA Terpenoid CYP71 medium pass
PITA_000075990-RA Terpenoid CYP71 medium pass
PITA_000077662-RA Terpenoid CYP71 medium pass
PITA_000084047-RA Terpenoid CYP71 medium borderline
PITA_000084189-RA Terpenoid CYP71 medium pass
PITA_000094540-RA Terpenoid CYP71 low borderline
PITAhm_002052-RA Terpenoid CYP71 low borderline