PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status
6A_I20_VO_L_1_T_112030/133533|m.55670.mrna1 Terpenoid HMGR low borderline
PITA_000000098-RA Terpenoid HMGR medium pass
PITA_000008162-RA Terpenoid HMGR low borderline
PITA_000015526-RA Terpenoid HMGR medium pass
PITA_000015749-RA Terpenoid HMGR medium pass
PITA_000016600-RA Terpenoid HMGR medium pass
PITA_000019339-RA Terpenoid HMGR medium pass
PITA_000022233-RA Terpenoid HMGR low borderline
PITA_000022235-RA Terpenoid HMGR low borderline
PITA_000022236-RA Terpenoid HMGR medium pass
PITA_000022349-RA Terpenoid HMGR medium pass
PITA_000028983-RA Terpenoid HMGR medium pass
PITA_000028985-RA Terpenoid HMGR medium pass
PITA_000033071-RA Terpenoid HMGR low borderline
PITA_000035645-RA Terpenoid HMGR medium pass
PITA_000035931-RA Terpenoid HMGR medium pass
PITA_000036409-RA Terpenoid HMGR medium pass
PITA_000036410-RA Terpenoid HMGR medium pass
PITA_000038452-RA Terpenoid HMGR medium pass
PITA_000040950-RA Terpenoid HMGR medium pass
PITA_000042491-RA Terpenoid HMGR low borderline
PITA_000042493-RA Terpenoid HMGR low borderline
PITA_000043969-RA Terpenoid HMGR medium pass
PITA_000045683-RA Terpenoid HMGR medium pass
PITA_000049847-RA Terpenoid HMGR medium pass
PITA_000049850-RA Terpenoid HMGR medium pass
PITA_000052766-RA Terpenoid HMGR medium pass
PITA_000056583-RA Terpenoid HMGR medium pass
PITA_000056610-RA Terpenoid HMGR medium pass
PITA_000057889-RA Terpenoid HMGR low borderline
PITA_000058224-RA Terpenoid HMGR medium pass
PITA_000060366-RA Terpenoid HMGR low borderline
PITA_000060367-RA Terpenoid HMGR medium pass
PITA_000064187-RA Terpenoid HMGR medium pass
PITA_000065201-RA Terpenoid HMGR medium pass
PITA_000065202-RA Terpenoid HMGR medium pass
PITA_000065727-RA Terpenoid HMGR medium pass
PITA_000067129-RA Terpenoid HMGR low borderline
PITA_000067130-RA Terpenoid HMGR medium pass
PITA_000067131-RA Terpenoid HMGR medium pass
PITA_000069659-RA Terpenoid HMGR low borderline
PITA_000070120-RA Terpenoid HMGR medium pass
PITA_000070467-RA Terpenoid HMGR low borderline
PITA_000070468-RA Terpenoid HMGR medium pass
PITA_000070840-RA Terpenoid HMGR medium pass
PITA_000073615-RA Terpenoid HMGR medium pass
PITA_000074353-RA Terpenoid HMGR low borderline
PITA_000075128-RA Terpenoid HMGR low borderline
PITA_000075501-RA Terpenoid HMGR medium pass
PITA_000075502-RA Terpenoid HMGR medium pass