PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
PITA_000000899-RA Flavonoid C4H medium borderline
PITA_000001426-RA Flavonoid C4H low borderline
PITA_000007972-RA Flavonoid C4H medium borderline
PITA_000009197-RA Flavonoid C4H low borderline
PITA_000019040-RA Flavonoid C4H medium borderline
PITA_000025417-RA Flavonoid C4H medium pass
PITA_000029497-RA Flavonoid C4H low borderline
PITA_000029638-RA Flavonoid C4H low borderline
PITA_000031376-RA Flavonoid C4H medium borderline
PITA_000032079-RA Flavonoid C4H medium borderline
PITA_000052144-RA Flavonoid C4H medium borderline
PITA_000057405-RA Flavonoid C4H medium borderline
PITA_000058705-RA Flavonoid C4H low borderline
PITA_000065148-RA Flavonoid C4H low borderline
PITA_000065196-RA Flavonoid C4H low borderline
PITA_000065709-RA Flavonoid C4H medium pass
PITA_000068974-RA Flavonoid C4H low borderline
PITA_000071640-RA Flavonoid C4H low borderline
PITA_000072351-RA Flavonoid C4H medium pass
PITA_000077664-RA Flavonoid C4H medium borderline
PITA_000082129-RA Flavonoid C4H low borderline
PITA_000088153-RA Flavonoid C4H low borderline
PITA_000089206-RA Flavonoid C4H low borderline
PITA_000094808-RA Flavonoid C4H low borderline
1A_I9_VO_L_3300_T_2/93|m.12522.mrna1 Rosmarinic Acid C4H low borderline
1A_all_VO_L_799_T_709/713|m.1521.mrna1 Rosmarinic Acid C4H medium pass
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Rosmarinic Acid C4H medium pass
2A_I15_VO_L_3412_T_2/3|m.22314.mrna1 Rosmarinic Acid C4H medium pass
2A_all_VO_L_10227_T_32/34|m.16145.mrna1 Rosmarinic Acid C4H medium pass
2A_all_VO_L_20057_T_11/12|m.16808.mrna1 Rosmarinic Acid C4H low borderline
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Rosmarinic Acid C4H medium pass
3A_I18_VO_L_2_T_92301/136250|m.32841.mrna1 Rosmarinic Acid C4H low borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna1 Rosmarinic Acid C4H low borderline
3A_all_VO_L_45670_T_3/7|m.29968.mrna2 Rosmarinic Acid C4H low borderline
5A_I15_VO_L_2583_T_52/67|m.47001.mrna1 Rosmarinic Acid C4H low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna1 Rosmarinic Acid C4H low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna2 Rosmarinic Acid C4H low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna3 Rosmarinic Acid C4H low borderline
5A_all_NT_comp98714_c0_seq3|m.38113.mrna1 Rosmarinic Acid C4H low borderline
5A_all_VO_L_146_T_102/129|m.40536.mrna1 Rosmarinic Acid C4H low borderline
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Rosmarinic Acid C4H low borderline
6A_I20_VO_L_989_T_15/28|m.55970.mrna1 Rosmarinic Acid C4H medium pass
6A_all_VO_L_40862_T_24/27|m.54451.mrna1 Rosmarinic Acid C4H low borderline
PITA_000000196-RA Rosmarinic Acid C4H low borderline
PITA_000000241-RA Rosmarinic Acid C4H medium pass
PITA_000000461-RA Rosmarinic Acid C4H low borderline
PITA_000000462-RA Rosmarinic Acid C4H low borderline
PITA_000000685-RA Rosmarinic Acid C4H medium pass
PITA_000000727-RA Rosmarinic Acid C4H low borderline
PITA_000000734-RA Rosmarinic Acid C4H low borderline