PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TAT
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Gene Pathway Family Confidence Status Best Target
PITA_000000243-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000000261-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000002834-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000002844-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000017479-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000017482-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000019120-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000021000-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000026782-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000028423-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000029572-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000031627-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000033795-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000036913-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000037965-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000043764-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000044044-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000044732-RA Rosmarinic Acid TAT medium pass TAT__00002__sp_Q9C969_ISS1_ARATH
PITA_000046713-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000052643-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000054013-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000060620-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000061751-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000064394-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000066698-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000066702-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000067825-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000067957-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000068038-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000068204-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000070091-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000070364-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000071365-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000078677-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000080551-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000081323-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000083647-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000084122-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000084286-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000084695-RA Rosmarinic Acid TAT medium pass TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000085465-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000089314-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000089564-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000092964-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000092965-RA Rosmarinic Acid TAT medium pass TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000094298-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO
PITA_000095346-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITA_000095986-RA Rosmarinic Acid TAT low borderline TAT__00003__sp_Q9LVY1_TAT_ARATH
PITAhm_000319-RA Rosmarinic Acid TAT low borderline TAT__00002__sp_Q9C969_ISS1_ARATH
PITAhm_002576-RA Rosmarinic Acid TAT low borderline TAT__00001__sp_A0A2K8FQU5_TAT_CATRO