PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
PITA_000005290-RA Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000006106-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000006631-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000007571-RA Flavonoid CHS low borderline CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000007991-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000014977-RA Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000015419-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000017127-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000017128-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000018216-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000018217-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000018218-RA Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
PITA_000018219-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000018504-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000019615-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000019616-RA Flavonoid CHS low borderline CHS__00008__sp_Q9AU09_PKS3_RUBID
PITA_000019618-RA Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000019619-RA Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
PITA_000019620-RA Flavonoid CHS low borderline CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000019622-RA Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
PITA_000020275-RA Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000023498-RA Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
PITA_000027202-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000035012-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000035013-RA Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000035014-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000035118-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000038714-RA Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000038715-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000039968-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000042321-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000045346-RA Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000045347-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000054711-RA Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000057590-RA Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
PITA_000057837-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000058354-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000063068-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000067087-RA Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000067288-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000067302-RA Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
PITA_000071359-RA Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000075318-RA Flavonoid CHS low borderline CHS__00011__sp_Q9FUB7_CHSY_HYPAN
PITA_000075512-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
PITA_000075689-RA Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
PITA_000076871-RA Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
PITA_000078793-RA Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000079653-RA Flavonoid CHS low borderline CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000079654-RA Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
PITA_000083105-RA Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA