PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
PITA_000000373-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000411-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000412-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000413-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000444-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000451-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000471-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000642-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000000848-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000001400-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000001401-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000001529-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000002172-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000002173-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000002174-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000002810-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000003415-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000004052-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000004054-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000004147-RA Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
PITA_000004762-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000005554-RA Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
PITA_000006367-RA Steroid CAS medium pass CAS__00002__sp_E2IUB0_CASS_KALDA
PITA_000006880-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000009655-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000009657-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000009688-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000009689-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000009690-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000011072-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000012766-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000013419-RA Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
PITA_000015253-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000016650-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000016917-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000018643-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000018694-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000018774-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000019690-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000020636-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000020917-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000020970-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000021128-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000021129-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000021130-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000021292-RA Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
PITA_000021293-RA Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
PITA_000022126-RA Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000022127-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
PITA_000022460-RA Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA