PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 8HGO
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Gene Pathway Family Confidence Status
6A_I27_NT_comp35812_c0_seq12|m.61587.mrna2 Alkaloid 8HGO medium borderline
6A_I27_NT_comp35812_c0_seq12|m.61587.mrna3 Alkaloid 8HGO medium borderline
PITA_000000245-RA Alkaloid 8HGO low borderline
PITA_000000328-RA Alkaloid 8HGO medium borderline
PITA_000000330-RA Alkaloid 8HGO medium pass
PITA_000000858-RA Alkaloid 8HGO medium borderline
PITA_000000859-RA Alkaloid 8HGO medium borderline
PITA_000001541-RA Alkaloid 8HGO medium borderline
PITA_000001731-RA Alkaloid 8HGO low borderline
PITA_000001732-RA Alkaloid 8HGO medium pass
PITA_000003834-RA Alkaloid 8HGO medium borderline
PITA_000003837-RA Alkaloid 8HGO medium borderline
PITA_000004182-RA Alkaloid 8HGO medium borderline
PITA_000004190-RA Alkaloid 8HGO medium pass
PITA_000004191-RA Alkaloid 8HGO medium borderline
PITA_000004192-RA Alkaloid 8HGO medium borderline
PITA_000005316-RA Alkaloid 8HGO medium borderline
PITA_000006516-RA Alkaloid 8HGO low borderline
PITA_000010771-RA Alkaloid 8HGO low borderline
PITA_000011685-RA Alkaloid 8HGO medium borderline
PITA_000012501-RA Alkaloid 8HGO low borderline
PITA_000012973-RA Alkaloid 8HGO medium borderline
PITA_000018288-RA Alkaloid 8HGO low borderline
PITA_000019488-RA Alkaloid 8HGO medium borderline
PITA_000019536-RA Alkaloid 8HGO medium borderline
PITA_000019880-RA Alkaloid 8HGO medium borderline
PITA_000020525-RA Alkaloid 8HGO low borderline
PITA_000021678-RA Alkaloid 8HGO medium borderline
PITA_000022558-RA Alkaloid 8HGO medium pass
PITA_000024716-RA Alkaloid 8HGO low borderline
PITA_000027429-RA Alkaloid 8HGO medium borderline
PITA_000027430-RA Alkaloid 8HGO medium borderline
PITA_000028147-RA Alkaloid 8HGO medium borderline
PITA_000028460-RA Alkaloid 8HGO low borderline
PITA_000029636-RA Alkaloid 8HGO low borderline
PITA_000030060-RA Alkaloid 8HGO medium pass
PITA_000031292-RA Alkaloid 8HGO low borderline
PITA_000032440-RA Alkaloid 8HGO low borderline
PITA_000034877-RA Alkaloid 8HGO medium borderline
PITA_000034879-RA Alkaloid 8HGO medium borderline
PITA_000035978-RA Alkaloid 8HGO medium borderline
PITA_000038072-RA Alkaloid 8HGO low borderline
PITA_000038074-RA Alkaloid 8HGO low borderline
PITA_000039528-RA Alkaloid 8HGO low borderline
PITA_000041316-RA Alkaloid 8HGO medium borderline
PITA_000041952-RA Alkaloid 8HGO medium borderline
PITA_000042691-RA Alkaloid 8HGO low borderline
PITA_000043338-RA Alkaloid 8HGO medium borderline
PITA_000044155-RA Alkaloid 8HGO medium borderline
PITA_000046866-RA Alkaloid 8HGO medium borderline