PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
1A_I3_VO_L_1_T_83782/136734|m.7084.mrna1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
1A_I3_VO_L_1_T_83782/136734|m.7084.mrna2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
2A_I13_VO_L_3956_T_33/40|m.20534.mrna1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
3A_I19_VO_L_5202_T_8/25|m.35701.mrna1 Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
5A_I15_VO_L_41045_T_8/9|m.47402.mrna2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000002703-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000002709-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000002718-RA Phenylpropanoid CCR medium pass CCR__00004__sp_G7JEE5_CCR2_MEDTR
PITA_000002719-RA Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000003222-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000005288-RA Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000012858-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000014273-RA Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
PITA_000014275-RA Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
PITA_000014276-RA Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
PITA_000015394-RA Phenylpropanoid CCR medium borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
PITA_000015398-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000019132-RA Phenylpropanoid CCR medium pass CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
PITA_000019563-RA Phenylpropanoid CCR low borderline CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
PITA_000022253-RA Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
PITA_000024916-RA Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
PITA_000025475-RA Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
PITA_000025526-RA Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
PITA_000026639-RA Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
PITA_000028848-RA Phenylpropanoid CCR low borderline CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
PITA_000032745-RA Phenylpropanoid CCR low borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
PITA_000033117-RA Phenylpropanoid CCR medium pass CCR__00009__sp_Q9SAH9_CCR2_ARATH
PITA_000036757-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000044132-RA Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000044264-RA Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000045292-RA Phenylpropanoid CCR low borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000046105-RA Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
PITA_000048632-RA Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000048633-RA Phenylpropanoid CCR medium pass CCR__00008__sp_Q9S9N9_CCR1_ARATH
PITA_000050188-RA Phenylpropanoid CCR low borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
PITA_000050189-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000050472-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000050859-RA Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000051225-RA Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000053855-RA Phenylpropanoid CCR medium pass CCR__00008__sp_Q9S9N9_CCR1_ARATH
PITA_000054477-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000054504-RA Phenylpropanoid CCR low borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
PITA_000055104-RA Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000057645-RA Phenylpropanoid CCR low borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000057915-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000058139-RA Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
PITA_000060097-RA Phenylpropanoid CCR low borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
PITA_000064175-RA Phenylpropanoid CCR medium pass CCR__00007__sp_Q9CA28_TKPR2_ARATH
PITA_000070509-RA Phenylpropanoid CCR medium pass CCR__00009__sp_Q9SAH9_CCR2_ARATH
PITA_000071128-RA Phenylpropanoid CCR medium pass CCR__00008__sp_Q9S9N9_CCR1_ARATH