PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
Reset
Gene Pathway Family Confidence Status Best Target
1A_I3_NT_comp45488_c0_seq2|m.6386.mrna1 Terpenoid BAHD low borderline BAHD__00023__sp_O22975_LPAAT_ARATH
1A_I3_NT_comp51965_c0_seq1|m.6505.mrna1 Terpenoid BAHD medium pass BAHD__00079__sp_Q9LIE4_ZDHC8_ARATH
1A_I3_NT_comp51965_c0_seq1|m.6505.mrna2 Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
3A_I18_VO_L_2_T_128098/136250|m.33128.mrna1 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
3A_I19_VO_L_1_T_198266/241978|m.35150.mrna2 Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
5A_I12_VO_L_66385_T_1/8|m.43996.mrna2 Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH
5A_all_VO_L_2_T_125246/409051|m.38948.mrna1 Terpenoid BAHD medium pass BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
5A_all_VO_L_7271_T_6/9|m.41437.mrna1 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
6A_I23_OT_comp39246_c0_seq1|m.58730.mrna1 Terpenoid BAHD medium pass BAHD__00097__sp_Q9ZV87_NAPES_ARATH
PITA_000000481-RA Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
PITA_000000482-RA Terpenoid BAHD low borderline BAHD__00017__sp_F4IDU4_MBOA1_ARATH
PITA_000000483-RA Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
PITA_000000833-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000000950-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000001005-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000001006-RA Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
PITA_000001273-RA Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000001584-RA Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000001800-RA Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
PITA_000001804-RA Terpenoid BAHD medium pass BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
PITA_000001901-RA Terpenoid BAHD low borderline BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
PITA_000002175-RA Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
PITA_000002181-RA Terpenoid BAHD low borderline BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
PITA_000002309-RA Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
PITA_000002833-RA Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000002834-RA Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000002844-RA Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
PITA_000002845-RA Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
PITA_000004008-RA Terpenoid BAHD medium pass BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
PITA_000004402-RA Terpenoid BAHD low borderline BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
PITA_000004915-RA Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
PITA_000004917-RA Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
PITA_000005133-RA Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000005937-RA Terpenoid BAHD low borderline BAHD__00044__sp_Q56WD9_THIK2_ARATH
PITA_000006100-RA Terpenoid BAHD medium pass BAHD__00084__sp_Q9M115_ZDH16_ARATH
PITA_000006323-RA Terpenoid BAHD medium pass BAHD__00074__sp_Q9FFQ7_FACT_ARATH
PITA_000006671-RA Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
PITA_000007331-RA Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
PITA_000008148-RA Terpenoid BAHD medium pass BAHD__00017__sp_F4IDU4_MBOA1_ARATH
PITA_000008207-RA Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
PITA_000009051-RA Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000009052-RA Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
PITA_000009099-RA Terpenoid BAHD medium pass BAHD__00066__sp_Q94CK0_WSD7_ARATH
PITA_000009101-RA Terpenoid BAHD low borderline BAHD__00066__sp_Q94CK0_WSD7_ARATH
PITA_000009104-RA Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
PITA_000009151-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000009373-RA Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
PITA_000009533-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000009650-RA Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
PITA_000010825-RA Terpenoid BAHD medium pass BAHD__00062__sp_Q93V61_LCAT3_ARATH