PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
1A_I3_VO_L_1_T_83782/136734|m.7084.mrna1 Flavonoid DFR medium borderline
1A_all_VO_L_2_T_4417/51331|m.1073.mrna2 Flavonoid DFR medium borderline
2A_I13_VO_L_3956_T_33/40|m.20534.mrna1 Flavonoid DFR medium borderline
3A_I19_VO_L_5202_T_8/25|m.35701.mrna1 Flavonoid DFR low borderline
5A_I15_VO_L_41045_T_8/9|m.47402.mrna2 Flavonoid DFR medium borderline
PITA_000000613-RA Flavonoid DFR low borderline
PITA_000001759-RA Flavonoid DFR medium pass
PITA_000001900-RA Flavonoid DFR medium borderline
PITA_000002703-RA Flavonoid DFR medium pass
PITA_000002709-RA Flavonoid DFR medium pass
PITA_000003222-RA Flavonoid DFR high pass
PITA_000005288-RA Flavonoid DFR medium borderline
PITA_000012165-RA Flavonoid DFR medium borderline
PITA_000012858-RA Flavonoid DFR medium borderline
PITA_000012859-RA Flavonoid DFR medium borderline
PITA_000014273-RA Flavonoid DFR medium borderline
PITA_000015394-RA Flavonoid DFR low borderline
PITA_000015398-RA Flavonoid DFR medium borderline
PITA_000019132-RA Flavonoid DFR medium borderline
PITA_000019887-RA Flavonoid DFR low borderline
PITA_000019889-RA Flavonoid DFR medium borderline
PITA_000019890-RA Flavonoid DFR low borderline
PITA_000021542-RA Flavonoid DFR medium borderline
PITA_000022049-RA Flavonoid DFR medium borderline
PITA_000023675-RA Flavonoid DFR low borderline
PITA_000027521-RA Flavonoid DFR medium borderline
PITA_000031702-RA Flavonoid DFR medium pass
PITA_000032745-RA Flavonoid DFR low borderline
PITA_000033117-RA Flavonoid DFR low borderline
PITA_000035320-RA Flavonoid DFR medium borderline
PITA_000036757-RA Flavonoid DFR medium borderline
PITA_000037556-RA Flavonoid DFR low borderline
PITA_000040412-RA Flavonoid DFR medium borderline
PITA_000041600-RA Flavonoid DFR medium borderline
PITA_000045898-RA Flavonoid DFR medium pass
PITA_000045901-RA Flavonoid DFR medium borderline
PITA_000045929-RA Flavonoid DFR low borderline
PITA_000046105-RA Flavonoid DFR low borderline
PITA_000046524-RA Flavonoid DFR medium borderline
PITA_000048633-RA Flavonoid DFR low borderline
PITA_000050189-RA Flavonoid DFR medium borderline
PITA_000050472-RA Flavonoid DFR medium borderline
PITA_000054463-RA Flavonoid DFR medium borderline
PITA_000054477-RA Flavonoid DFR medium pass
PITA_000055483-RA Flavonoid DFR medium borderline
PITA_000057297-RA Flavonoid DFR low borderline
PITA_000058448-RA Flavonoid DFR medium borderline
PITA_000060926-RA Flavonoid DFR low borderline
PITA_000061701-RA Flavonoid DFR low borderline
PITA_000062308-RA Flavonoid DFR low borderline