PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
2A_I13_NT_comp39368_c0_seq8|m.19043.mrna1 Steroid CYP90D1 low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna1 Steroid CYP90D1 low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna2 Steroid CYP90D1 low borderline
5A_I7_NT_comp32793_c0_seq1|m.49919.mrna3 Steroid CYP90D1 low borderline
5A_all_VO_L_2_T_296355/409051|m.39907.mrna1 Steroid CYP90D1 low borderline
PITA_000000461-RA Steroid CYP90D1 low borderline
PITA_000000609-RA Steroid CYP90D1 low borderline
PITA_000001395-RA Steroid CYP90D1 low borderline
PITA_000007756-RA Steroid CYP90D1 low borderline
PITA_000010256-RA Steroid CYP90D1 low borderline
PITA_000010257-RA Steroid CYP90D1 low borderline
PITA_000010409-RA Steroid CYP90D1 low borderline
PITA_000011816-RA Steroid CYP90D1 low borderline
PITA_000017138-RA Steroid CYP90D1 medium pass
PITA_000017562-RA Steroid CYP90D1 medium borderline
PITA_000020637-RA Steroid CYP90D1 low borderline
PITA_000023806-RA Steroid CYP90D1 low borderline
PITA_000023808-RA Steroid CYP90D1 low borderline
PITA_000023811-RA Steroid CYP90D1 medium pass
PITA_000024089-RA Steroid CYP90D1 low borderline
PITA_000025276-RA Steroid CYP90D1 low borderline
PITA_000025412-RA Steroid CYP90D1 low borderline
PITA_000025821-RA Steroid CYP90D1 low borderline
PITA_000028722-RA Steroid CYP90D1 low borderline
PITA_000029574-RA Steroid CYP90D1 low borderline
PITA_000029594-RA Steroid CYP90D1 low borderline
PITA_000030991-RA Steroid CYP90D1 low borderline
PITA_000031001-RA Steroid CYP90D1 low borderline
PITA_000032176-RA Steroid CYP90D1 low borderline
PITA_000033586-RA Steroid CYP90D1 low borderline
PITA_000036583-RA Steroid CYP90D1 low borderline
PITA_000037777-RA Steroid CYP90D1 low borderline
PITA_000045592-RA Steroid CYP90D1 low borderline
PITA_000046806-RA Steroid CYP90D1 medium borderline
PITA_000047291-RA Steroid CYP90D1 low borderline
PITA_000051299-RA Steroid CYP90D1 low borderline
PITA_000051406-RA Steroid CYP90D1 low borderline
PITA_000052927-RA Steroid CYP90D1 low borderline
PITA_000053270-RA Steroid CYP90D1 low borderline
PITA_000053544-RA Steroid CYP90D1 medium borderline
PITA_000055651-RA Steroid CYP90D1 medium borderline
PITA_000055794-RA Steroid CYP90D1 low borderline
PITA_000057647-RA Steroid CYP90D1 low borderline
PITA_000060494-RA Steroid CYP90D1 low borderline
PITA_000062453-RA Steroid CYP90D1 low borderline
PITA_000064624-RA Steroid CYP90D1 low borderline
PITA_000066295-RA Steroid CYP90D1 medium borderline
PITA_000068989-RA Steroid CYP90D1 low borderline
PITA_000074612-RA Steroid CYP90D1 low borderline
PITA_000074613-RA Steroid CYP90D1 low borderline