PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status
6A_all_NT_comp98769_c1_seq9|m.51850.mrna1 Terpenoid TPS low borderline
PITA_000000373-RA Terpenoid TPS low borderline
PITA_000000406-RA Terpenoid TPS medium pass
PITA_000000411-RA Terpenoid TPS medium pass
PITA_000000412-RA Terpenoid TPS medium pass
PITA_000000413-RA Terpenoid TPS low borderline
PITA_000000414-RA Terpenoid TPS low borderline
PITA_000000416-RA Terpenoid TPS medium pass
PITA_000000444-RA Terpenoid TPS medium pass
PITA_000000451-RA Terpenoid TPS medium pass
PITA_000000471-RA Terpenoid TPS medium pass
PITA_000000642-RA Terpenoid TPS medium pass
PITA_000000847-RA Terpenoid TPS medium pass
PITA_000000848-RA Terpenoid TPS low borderline
PITA_000001400-RA Terpenoid TPS medium pass
PITA_000001401-RA Terpenoid TPS medium pass
PITA_000001529-RA Terpenoid TPS medium pass
PITA_000002172-RA Terpenoid TPS medium pass
PITA_000002173-RA Terpenoid TPS medium pass
PITA_000002174-RA Terpenoid TPS low borderline
PITA_000002193-RA Terpenoid TPS medium pass
PITA_000002511-RA Terpenoid TPS medium pass
PITA_000002513-RA Terpenoid TPS medium pass
PITA_000002810-RA Terpenoid TPS medium pass
PITA_000003415-RA Terpenoid TPS medium pass
PITA_000004052-RA Terpenoid TPS medium pass
PITA_000004053-RA Terpenoid TPS medium pass
PITA_000004054-RA Terpenoid TPS medium pass
PITA_000004762-RA Terpenoid TPS medium pass
PITA_000005791-RA Terpenoid TPS medium pass
PITA_000006880-RA Terpenoid TPS medium pass
PITA_000007136-RA Terpenoid TPS medium pass
PITA_000009592-RA Terpenoid TPS medium pass
PITA_000009655-RA Terpenoid TPS medium pass
PITA_000009657-RA Terpenoid TPS medium pass
PITA_000009688-RA Terpenoid TPS medium pass
PITA_000009689-RA Terpenoid TPS medium pass
PITA_000009690-RA Terpenoid TPS medium pass
PITA_000011072-RA Terpenoid TPS medium pass
PITA_000011887-RA Terpenoid TPS medium pass
PITA_000012766-RA Terpenoid TPS medium pass
PITA_000015253-RA Terpenoid TPS medium pass
PITA_000016076-RA Terpenoid TPS medium pass
PITA_000016104-RA Terpenoid TPS medium pass
PITA_000016648-RA Terpenoid TPS low borderline
PITA_000016649-RA Terpenoid TPS medium pass
PITA_000016650-RA Terpenoid TPS medium pass
PITA_000016917-RA Terpenoid TPS medium pass
PITA_000016918-RA Terpenoid TPS medium pass
PITA_000017108-RA Terpenoid TPS low borderline