PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Current group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.92% Phenylpropanoid pathway 23.93% Alkaloid pathway 19.88% Flavonoid pathway 15.18% Rosmarinic acid pathway 7.75% Steroid pathway 5.34%
Family Distribution
C4H 5.65% C3'H/CYP98A 5.17% UGT 4.84% 4CL 4.56% CYP76 4.22% BAHD 4.21% POD 4.18% 7DLGT 3.84%
Other Families 63.32%
More Families (98)
UFGT 426 3.36% IFS 424 3.34% TPS 369 2.91% F3H 301 2.37% DWF4/CYP90B1 292 2.3% CAD 273 2.15% GES 258 2.03% F3'H/CYP75B 253 1.99% CAS 239 1.88% BR6OX2/CYP85A2 234 1.84% G8O/G8H 232 1.83% LAC 227 1.79% T3O 208 1.64% H6H 200 1.58% IFR 189 1.49% T16H 183 1.44% CODM/T6ODM 181 1.43% IO 156 1.23% NMT 151 1.19% F3'5'H/CYP75A 138 1.09% TRI/TRII 135 1.06% SGD 134 1.06% COMT 128 1.01% HCT 118 0.93% PAL 117 0.92% STR 98 0.77% SMT1/SMT2/SMT3 98 0.77% FNS 96 0.76% F5H/CYP84A 94 0.74% PYKS 92 0.72% 8HGO 89 0.7% 7DLH 89 0.7% RAS 85 0.67% GS 84 0.66% 16OMT 80 0.63% PMT 76 0.6% SLS 75 0.59% ANR 74 0.58% HMGR 74 0.58% ANS/LDOX 73 0.58% DFR 69 0.54% CYP90D1 69 0.54% CHS 67 0.53% CCR 64 0.5% LAMT 60 0.47% NCS 59 0.46% CSE 54 0.43% TAT 50 0.39% CPD/CYP90A1 47 0.37% GGPPS 43 0.34% BR6OX1/CYP85A1 41 0.32% CYP80B1 39 0.31% ISY 38 0.3% BBE 34 0.27% CYP71 31 0.24% XMT_MXMT_DXMT 28 0.22% ADC 26 0.2% ODC 24 0.19% CHI 24 0.19% FPPS 24 0.19% CYP719 23 0.18% COR 22 0.17% 6OMT_4OMT_SOMT 19 0.15% CCoAOMT 18 0.14% ROT3/CYP90C1 18 0.14% CNMT 17 0.13% MPO 15 0.12% FLS 15 0.12% DWF1 13 0.1% DET2 12 0.09% AACT 12 0.09% CYP51G1 10 0.08% CPR 9 0.07% HDS/IspG 9 0.07% IDI 9 0.07% MVK 8 0.06% HPPR 7 0.06% DWF5 7 0.06% CYP80F1 6 0.05% CMK/IspE 6 0.05% DXS 6 0.05% TDC 4 0.03% SQS/FDFT1 4 0.03% SQE 4 0.03% HYD1 3 0.02% CPI1 3 0.02% HDR/IspH 3 0.02% HMGS 3 0.02% MVD 3 0.02% FK 2 0.02% SMO1/SMO2 2 0.02% DWF7 2 0.02% DXR 2 0.02% PMK 2 0.02% MDS/IspF 2 0.02% TYDC_DDC 1 0.01% MCT/IspD 1 0.01% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
1A_I3_VO_L_4085_T_11/15|m.8084.mrna1 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000000671-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000000963-RA Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000002543-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000005782-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000006188-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000006191-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000008712-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000008883-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000009445-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000011502-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000011505-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000011676-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000012869-RA Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
PITA_000013103-RA Alkaloid STR low borderline STR__00003__sp_Q9M1B4_SSL13_ARATH
PITA_000013426-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000014958-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000016244-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000016602-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000016941-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000017588-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000021533-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000022109-RA Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
PITA_000023087-RA Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
PITA_000023224-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000023300-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000023998-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000024298-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000024481-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000026986-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000027572-RA Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000028799-RA Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000030804-RA Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000030806-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000031760-RA Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000032185-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000032449-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000032451-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000032735-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000035225-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000036238-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000037261-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000037501-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000037676-RA Alkaloid STR medium pass STR__00003__sp_Q9M1B4_SSL13_ARATH
PITA_000038562-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000039909-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000040334-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000040335-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000042807-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
PITA_000043542-RA Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR