Pinus taeda (pinus_taeda)
Imported from atlas release summary for Pinus taeda.
5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
5262
Candidate Genes
C4H
5.65%
C3'H/CYP98A
5.17%
UGT
4.84%
4CL
4.56%
CYP76
4.22%
BAHD
4.21%
POD
4.18%
7DLGT
3.84%
Other Families
63.32%
More Families (98)
UFGT
426
3.36%
IFS
424
3.34%
TPS
369
2.91%
F3H
301
2.37%
DWF4/CYP90B1
292
2.3%
CAD
273
2.15%
GES
258
2.03%
F3'H/CYP75B
253
1.99%
CAS
239
1.88%
BR6OX2/CYP85A2
234
1.84%
G8O/G8H
232
1.83%
LAC
227
1.79%
T3O
208
1.64%
H6H
200
1.58%
IFR
189
1.49%
T16H
183
1.44%
CODM/T6ODM
181
1.43%
IO
156
1.23%
NMT
151
1.19%
F3'5'H/CYP75A
138
1.09%
TRI/TRII
135
1.06%
SGD
134
1.06%
COMT
128
1.01%
HCT
118
0.93%
PAL
117
0.92%
STR
98
0.77%
SMT1/SMT2/SMT3
98
0.77%
FNS
96
0.76%
F5H/CYP84A
94
0.74%
PYKS
92
0.72%
8HGO
89
0.7%
7DLH
89
0.7%
RAS
85
0.67%
GS
84
0.66%
16OMT
80
0.63%
PMT
76
0.6%
SLS
75
0.59%
ANR
74
0.58%
HMGR
74
0.58%
ANS/LDOX
73
0.58%
DFR
69
0.54%
CYP90D1
69
0.54%
CHS
67
0.53%
CCR
64
0.5%
LAMT
60
0.47%
NCS
59
0.46%
CSE
54
0.43%
TAT
50
0.39%
CPD/CYP90A1
47
0.37%
GGPPS
43
0.34%
BR6OX1/CYP85A1
41
0.32%
CYP80B1
39
0.31%
ISY
38
0.3%
BBE
34
0.27%
CYP71
31
0.24%
XMT_MXMT_DXMT
28
0.22%
ADC
26
0.2%
ODC
24
0.19%
CHI
24
0.19%
FPPS
24
0.19%
CYP719
23
0.18%
COR
22
0.17%
6OMT_4OMT_SOMT
19
0.15%
CCoAOMT
18
0.14%
ROT3/CYP90C1
18
0.14%
CNMT
17
0.13%
MPO
15
0.12%
FLS
15
0.12%
DWF1
13
0.1%
DET2
12
0.09%
AACT
12
0.09%
CYP51G1
10
0.08%
CPR
9
0.07%
HDS/IspG
9
0.07%
IDI
9
0.07%
MVK
8
0.06%
HPPR
7
0.06%
DWF5
7
0.06%
CYP80F1
6
0.05%
CMK/IspE
6
0.05%
DXS
6
0.05%
TDC
4
0.03%
SQS/FDFT1
4
0.03%
SQE
4
0.03%
HYD1
3
0.02%
CPI1
3
0.02%
HDR/IspH
3
0.02%
HMGS
3
0.02%
MVD
3
0.02%
FK
2
0.02%
SMO1/SMO2
2
0.02%
DWF7
2
0.02%
DXR
2
0.02%
PMK
2
0.02%
MDS/IspF
2
0.02%
TYDC_DDC
1
0.01%
MCT/IspD
1
0.01%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1469 | 18 | UGT (484) | View species results |
| Phenylpropanoid pathway | 1259 | 13 | POD (460) | View species results |
| Alkaloid pathway | 1046 | 30 | 7DLGT (246) | View species results |
| Flavonoid pathway | 799 | 16 | UFGT (341) | View species results |
| Rosmarinic acid pathway | 408 | 7 | 4CL (161) | View species results |
| Steroid pathway | 281 | 16 | CAS (195) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4571 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 737 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| 1A_I11_NT_comp49445_c0_seq3|m.4479.mrna1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| 1A_I3_NT_comp53258_c0_seq2|m.6566.mrna2 | Terpenoid | UGT | medium | pass | UGT__00068__sp_P0DO75_GT752_SIRGR |
| 1A_I9_VO_L_2122_T_92/101|m.12450.mrna1 | Terpenoid | UGT | medium | pass | UGT__00102__sp_Q9LZD8_U89A2_ARATH |
| 1A_all_VO_L_10621_T_8/20|m.2398.mrna1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| 1A_all_VO_L_5517_T_887/930|m.2020.mrna1 | Terpenoid | UGT | medium | pass | UGT__00101__sp_Q9LVR1_U72E2_ARATH |
| 2A_I4_VO_L_831_T_41/65|m.26747.mrna1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| 3A_I19_VO_L_1_T_135982/241978|m.34819.mrna1 | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| 5A_I16_VO_L_3074_T_89/89|m.49426.mrna2 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| 5A_I16_VO_L_4_T_65838/214906|m.48071.mrna1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| 6A_I23_NT_comp44453_c0_seq2|m.58668.mrna1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| PITA_000000003-RA | Terpenoid | UGT | medium | pass | UGT__00114__sp_U3THC0_FG2KI_SOYBN |
| PITA_000000004-RA | Terpenoid | UGT | medium | pass | UGT__00035__sp_I1KEV6_FG3H_SOYBN |
| PITA_000000186-RA | Terpenoid | UGT | low | borderline | UGT__00057__sp_O81498_U72E3_ARATH |
| PITA_000000276-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000000385-RA | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| PITA_000000672-RA | Terpenoid | UGT | medium | pass | UGT__00070__sp_Q5XF20_U84A1_ARATH |
| PITA_000000673-RA | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| PITA_000000694-RA | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| PITA_000000941-RA | Terpenoid | UGT | low | borderline | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| PITA_000001275-RA | Terpenoid | UGT | low | borderline | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| PITA_000001285-RA | Terpenoid | UGT | medium | pass | UGT__00106__sp_Q9SKC5_U74D1_ARATH |
| PITA_000001286-RA | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| PITA_000001287-RA | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| PITA_000001288-RA | Terpenoid | UGT | medium | pass | UGT__00016__sp_A0A193AUF6_GGT23_PUNGR |
| PITA_000001296-RA | Terpenoid | UGT | low | borderline | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| PITA_000001297-RA | Terpenoid | UGT | medium | pass | UGT__00055__sp_O48676_U74B1_ARATH |
| PITA_000001299-RA | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| PITA_000001300-RA | Terpenoid | UGT | low | borderline | UGT__00093__sp_Q9LR44_U75B1_ARATH |
| PITA_000001305-RA | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| PITA_000001645-RA | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| PITA_000002710-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000003434-RA | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| PITA_000003505-RA | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| PITA_000003513-RA | Terpenoid | UGT | medium | pass | UGT__00022__sp_B2XBQ5_85A19_PRUDU |
| PITA_000003789-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000004391-RA | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| PITA_000005255-RA | Terpenoid | UGT | low | borderline | UGT__00111__sp_Q9ZQ99_U73C1_ARATH |
| PITA_000006175-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000006739-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000007027-RA | Terpenoid | UGT | low | borderline | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| PITA_000008221-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000009154-RA | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| PITA_000009157-RA | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| PITA_000009334-RA | Terpenoid | UGT | medium | pass | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| PITA_000009396-RA | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000009397-RA | Terpenoid | UGT | low | borderline | UGT__00103__sp_Q9M156_U72B1_ARATH |
| PITA_000010329-RA | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| PITA_000010599-RA | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| PITA_000011693-RA | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| PITA_000011696-RA | Terpenoid | UGT | medium | pass | UGT__00047__sp_K7NBW3_74AC1_SIRGR |