PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
Reset
Gene Pathway Family Confidence Status
3A_I16_NT_comp35193_c0_seq7|m.30475.mrna2 Steroid CPD/CYP90A1 medium borderline
PITA_000000196-RA Steroid CPD/CYP90A1 medium borderline
PITA_000010943-RA Steroid CPD/CYP90A1 low borderline
PITA_000011084-RA Steroid CPD/CYP90A1 medium borderline
PITA_000011384-RA Steroid CPD/CYP90A1 low borderline
PITA_000011912-RA Steroid CPD/CYP90A1 low borderline
PITA_000026745-RA Steroid CPD/CYP90A1 low borderline
PITA_000029032-RA Steroid CPD/CYP90A1 low borderline
PITA_000029793-RA Steroid CPD/CYP90A1 low borderline
PITA_000030532-RA Steroid CPD/CYP90A1 low borderline
PITA_000035326-RA Steroid CPD/CYP90A1 low borderline
PITA_000039712-RA Steroid CPD/CYP90A1 medium borderline
PITA_000040627-RA Steroid CPD/CYP90A1 medium borderline
PITA_000048450-RA Steroid CPD/CYP90A1 low borderline
PITA_000050797-RA Steroid CPD/CYP90A1 low borderline
PITA_000053198-RA Steroid CPD/CYP90A1 low borderline
PITA_000053952-RA Steroid CPD/CYP90A1 medium borderline
PITA_000054771-RA Steroid CPD/CYP90A1 medium borderline
PITA_000055336-RA Steroid CPD/CYP90A1 medium borderline
PITA_000057147-RA Steroid CPD/CYP90A1 low borderline
PITA_000057544-RA Steroid CPD/CYP90A1 low borderline
PITA_000060974-RA Steroid CPD/CYP90A1 low borderline
PITA_000061060-RA Steroid CPD/CYP90A1 medium borderline
PITA_000064653-RA Steroid CPD/CYP90A1 medium borderline
PITA_000064866-RA Steroid CPD/CYP90A1 low borderline
PITA_000065149-RA Steroid CPD/CYP90A1 low borderline
PITA_000065346-RA Steroid CPD/CYP90A1 medium borderline
PITA_000066592-RA Steroid CPD/CYP90A1 low borderline
PITA_000070887-RA Steroid CPD/CYP90A1 medium borderline
PITA_000073982-RA Steroid CPD/CYP90A1 low borderline
PITA_000074153-RA Steroid CPD/CYP90A1 low borderline
PITA_000074526-RA Steroid CPD/CYP90A1 medium borderline
PITA_000074632-RA Steroid CPD/CYP90A1 low borderline
PITA_000075005-RA Steroid CPD/CYP90A1 low borderline
PITA_000076806-RA Steroid CPD/CYP90A1 low borderline
PITA_000076867-RA Steroid CPD/CYP90A1 low borderline
PITA_000082064-RA Steroid CPD/CYP90A1 low borderline
PITA_000083157-RA Steroid CPD/CYP90A1 medium borderline
PITA_000084733-RA Steroid CPD/CYP90A1 medium borderline
PITA_000086303-RA Steroid CPD/CYP90A1 medium borderline
PITA_000087185-RA Steroid CPD/CYP90A1 low borderline
PITA_000088109-RA Steroid CPD/CYP90A1 low borderline
PITA_000088442-RA Steroid CPD/CYP90A1 medium borderline
PITA_000088682-RA Steroid CPD/CYP90A1 medium borderline
PITA_000091743-RA Steroid CPD/CYP90A1 low borderline
PITA_000094099-RA Steroid CPD/CYP90A1 medium borderline
PITAhm_000305-RA Steroid CPD/CYP90A1 medium borderline