PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status
6A_I21_VO_L_34946_T_12/40|m.57554.mrna1 Alkaloid NMT medium pass
PITA_000000047-RA Alkaloid NMT medium borderline
PITA_000000053-RA Alkaloid NMT low borderline
PITA_000003606-RA Alkaloid NMT medium pass
PITA_000008521-RA Alkaloid NMT medium borderline
PITA_000011795-RA Alkaloid NMT medium pass
PITA_000012181-RA Alkaloid NMT medium pass
PITA_000014262-RA Alkaloid NMT medium pass
PITA_000015800-RA Alkaloid NMT medium pass
PITA_000017252-RA Alkaloid NMT medium borderline
PITA_000017365-RA Alkaloid NMT low borderline
PITA_000017402-RA Alkaloid NMT medium pass
PITA_000017881-RA Alkaloid NMT medium borderline
PITA_000018870-RA Alkaloid NMT medium borderline
PITA_000019780-RA Alkaloid NMT low borderline
PITA_000019781-RA Alkaloid NMT low borderline
PITA_000021792-RA Alkaloid NMT medium pass
PITA_000021793-RA Alkaloid NMT medium borderline
PITA_000021794-RA Alkaloid NMT medium pass
PITA_000021876-RA Alkaloid NMT medium pass
PITA_000023306-RA Alkaloid NMT medium borderline
PITA_000023923-RA Alkaloid NMT medium pass
PITA_000023925-RA Alkaloid NMT medium pass
PITA_000024065-RA Alkaloid NMT medium pass
PITA_000024674-RA Alkaloid NMT medium pass
PITA_000025014-RA Alkaloid NMT medium borderline
PITA_000026542-RA Alkaloid NMT medium borderline
PITA_000026648-RA Alkaloid NMT low borderline
PITA_000027503-RA Alkaloid NMT medium borderline
PITA_000027508-RA Alkaloid NMT medium borderline
PITA_000028096-RA Alkaloid NMT low borderline
PITA_000029017-RA Alkaloid NMT medium borderline
PITA_000029040-RA Alkaloid NMT medium borderline
PITA_000029717-RA Alkaloid NMT medium pass
PITA_000030078-RA Alkaloid NMT low borderline
PITA_000030571-RA Alkaloid NMT medium pass
PITA_000030703-RA Alkaloid NMT medium borderline
PITA_000031403-RA Alkaloid NMT low borderline
PITA_000032296-RA Alkaloid NMT medium pass
PITA_000032890-RA Alkaloid NMT medium borderline
PITA_000034241-RA Alkaloid NMT low borderline
PITA_000034846-RA Alkaloid NMT low borderline
PITA_000035865-RA Alkaloid NMT medium pass
PITA_000036214-RA Alkaloid NMT low borderline
PITA_000037596-RA Alkaloid NMT medium pass
PITA_000037598-RA Alkaloid NMT medium pass
PITA_000037824-RA Alkaloid NMT medium pass
PITA_000038326-RA Alkaloid NMT medium borderline
PITA_000039955-RA Alkaloid NMT medium borderline
PITA_000041625-RA Alkaloid NMT medium pass