PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status
1A_I5_VO_L_252_T_126/507|m.9280.mrna2 Alkaloid NCS medium borderline
3A_I20_NT_comp26092_c0_seq1|m.35935.mrna1 Alkaloid NCS medium borderline
PITA_000001634-RA Alkaloid NCS medium borderline
PITA_000001661-RA Alkaloid NCS medium borderline
PITA_000004284-RA Alkaloid NCS low borderline
PITA_000004289-RA Alkaloid NCS medium borderline
PITA_000006190-RA Alkaloid NCS medium borderline
PITA_000006198-RA Alkaloid NCS medium borderline
PITA_000006249-RA Alkaloid NCS medium borderline
PITA_000006251-RA Alkaloid NCS medium borderline
PITA_000006295-RA Alkaloid NCS medium borderline
PITA_000008291-RA Alkaloid NCS medium borderline
PITA_000015936-RA Alkaloid NCS medium borderline
PITA_000016691-RA Alkaloid NCS medium borderline
PITA_000017011-RA Alkaloid NCS medium borderline
PITA_000033784-RA Alkaloid NCS medium borderline
PITA_000034865-RA Alkaloid NCS medium borderline
PITA_000036758-RA Alkaloid NCS medium borderline
PITA_000036797-RA Alkaloid NCS medium borderline
PITA_000039748-RA Alkaloid NCS medium borderline
PITA_000040005-RA Alkaloid NCS medium borderline
PITA_000040456-RA Alkaloid NCS low borderline
PITA_000041219-RA Alkaloid NCS medium borderline
PITA_000042784-RA Alkaloid NCS medium borderline
PITA_000044596-RA Alkaloid NCS low borderline
PITA_000046301-RA Alkaloid NCS medium borderline
PITA_000049845-RA Alkaloid NCS medium pass
PITA_000051193-RA Alkaloid NCS medium borderline
PITA_000054229-RA Alkaloid NCS medium borderline
PITA_000055728-RA Alkaloid NCS medium borderline
PITA_000056390-RA Alkaloid NCS medium borderline
PITA_000058756-RA Alkaloid NCS medium borderline
PITA_000058757-RA Alkaloid NCS medium borderline
PITA_000059058-RA Alkaloid NCS medium borderline
PITA_000061533-RA Alkaloid NCS medium borderline
PITA_000064234-RA Alkaloid NCS medium borderline
PITA_000065976-RA Alkaloid NCS medium borderline
PITA_000066985-RA Alkaloid NCS medium borderline
PITA_000067166-RA Alkaloid NCS medium borderline
PITA_000067532-RA Alkaloid NCS medium borderline
PITA_000069352-RA Alkaloid NCS medium borderline
PITA_000069353-RA Alkaloid NCS low borderline
PITA_000071773-RA Alkaloid NCS medium borderline
PITA_000072343-RA Alkaloid NCS medium borderline
PITA_000075244-RA Alkaloid NCS medium borderline
PITA_000075500-RA Alkaloid NCS medium borderline
PITA_000077573-RA Alkaloid NCS medium borderline
PITA_000077686-RA Alkaloid NCS medium borderline
PITA_000078357-RA Alkaloid NCS medium borderline
PITA_000078409-RA Alkaloid NCS medium borderline