PlantSME Plant secondary metabolism enzyme database

Pinus taeda (pinus_taeda)

Imported from atlas release summary for Pinus taeda.

5262
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Gymnosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1469 18 UGT (484) View species results
Phenylpropanoid pathway 1259 13 POD (460) View species results
Alkaloid pathway 1046 30 7DLGT (246) View species results
Flavonoid pathway 799 16 UFGT (341) View species results
Rosmarinic acid pathway 408 7 4CL (161) View species results
Steroid pathway 281 16 CAS (195) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4571 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 737 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Gene Pathway Family Confidence Status
PITA_000000522-RA Flavonoid IFR low borderline
PITA_000001059-RA Flavonoid IFR high pass
PITA_000002308-RA Flavonoid IFR medium pass
PITA_000002951-RA Flavonoid IFR medium pass
PITA_000003830-RA Flavonoid IFR medium pass
PITA_000004917-RA Flavonoid IFR low borderline
PITA_000005686-RA Flavonoid IFR high pass
PITA_000005688-RA Flavonoid IFR high pass
PITA_000007189-RA Flavonoid IFR high pass
PITA_000007196-RA Flavonoid IFR high pass
PITA_000007198-RA Flavonoid IFR high pass
PITA_000008198-RA Flavonoid IFR low borderline
PITA_000009317-RA Flavonoid IFR medium pass
PITA_000012735-RA Flavonoid IFR low borderline
PITA_000013737-RA Flavonoid IFR medium pass
PITA_000014831-RA Flavonoid IFR low borderline
PITA_000015250-RA Flavonoid IFR low borderline
PITA_000018123-RA Flavonoid IFR medium pass
PITA_000018138-RA Flavonoid IFR high pass
PITA_000018698-RA Flavonoid IFR low borderline
PITA_000018874-RA Flavonoid IFR high pass
PITA_000020371-RA Flavonoid IFR low borderline
PITA_000021231-RA Flavonoid IFR low borderline
PITA_000021232-RA Flavonoid IFR medium pass
PITA_000021884-RA Flavonoid IFR low borderline
PITA_000022482-RA Flavonoid IFR medium pass
PITA_000023758-RA Flavonoid IFR low borderline
PITA_000024802-RA Flavonoid IFR medium pass
PITA_000024916-RA Flavonoid IFR medium pass
PITA_000026274-RA Flavonoid IFR low borderline
PITA_000027243-RA Flavonoid IFR medium pass
PITA_000027244-RA Flavonoid IFR low borderline
PITA_000029134-RA Flavonoid IFR low borderline
PITA_000030077-RA Flavonoid IFR low borderline
PITA_000030124-RA Flavonoid IFR low borderline
PITA_000030939-RA Flavonoid IFR low borderline
PITA_000031496-RA Flavonoid IFR medium pass
PITA_000032198-RA Flavonoid IFR medium pass
PITA_000032285-RA Flavonoid IFR medium pass
PITA_000032301-RA Flavonoid IFR low borderline
PITA_000032370-RA Flavonoid IFR medium pass
PITA_000032371-RA Flavonoid IFR high pass
PITA_000032372-RA Flavonoid IFR high pass
PITA_000032886-RA Flavonoid IFR low borderline
PITA_000033527-RA Flavonoid IFR low borderline
PITA_000033590-RA Flavonoid IFR low borderline
PITA_000034311-RA Flavonoid IFR low borderline
PITA_000034479-RA Flavonoid IFR low borderline
PITA_000036233-RA Flavonoid IFR low borderline
PITA_000037183-RA Flavonoid IFR medium pass