PlantSME Plant secondary metabolism enzyme database
IFS

IFS

Atlas summary family IFS.

Lineage Coverage
Detected in 324 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Rhododendron vialii
Triticum turgidum
Pinus taeda
Avena atlantica
Related Modules
Flavonoid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 541 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
PAL 7015 C4H 464 4CL 25907
Flavonoid scaffold formation
CHS 11738 CHI 3089
Flavone and isoflavonoid branches
FNS 359 IFS 541 IFR 11814
Dihydroflavonol branches
F3H 4697 F3'H/CYP75B 1332 F3'5'H/CYP75A 247 FLS 124
Anthocyanin and proanthocyanidin branches
DFR 1310 ANS/LDOX 1019 UFGT 106747 ANR 1183
Family Gene List
GeneSpeciesProtein ID
fragaria_chiloensis_maker-3A-augustus-gene-32.101-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-3A-augustus-gene-32.101-mRNA-1
fragaria_chiloensis_maker-3B-augustus-gene-285.8-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-3B-augustus-gene-285.8-mRNA-1
fragaria_chiloensis_maker-3D-augustus-gene-25.5-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-3D-augustus-gene-25.5-mRNA-1
fragaria_chiloensis_maker-3D-augustus-gene-25.7-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-3D-augustus-gene-25.7-mRNA-1
fragaria_chiloensis_maker-6A-augustus-gene-347.155-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6A-augustus-gene-347.155-mRNA-1
fragaria_chiloensis_maker-6B-augustus-gene-335.71-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6B-augustus-gene-335.71-mRNA-1
fragaria_chiloensis_maker-6B-augustus-gene-378.150-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6B-augustus-gene-378.150-mRNA-1
fragaria_chiloensis_maker-6B-augustus-gene-75.95-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6B-augustus-gene-75.95-mRNA-1
fragaria_chiloensis_maker-6C-augustus-gene-295.85-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6C-augustus-gene-295.85-mRNA-1
fragaria_chiloensis_maker-6C-augustus-gene-45.109-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6C-augustus-gene-45.109-mRNA-1
fragaria_chiloensis_maker-6D-augustus-gene-267.110-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6D-augustus-gene-267.110-mRNA-1
fragaria_iinumae_evm.model.scaf_14.2094 fragaria_iinumae fragaria_iinumae_evm.model.scaf_14.2094
fragaria_iinumae_evm.model.scaf_30.74 fragaria_iinumae fragaria_iinumae_evm.model.scaf_30.74
fragaria_iinumae_evm.model.scaf_41.1069 fragaria_iinumae fragaria_iinumae_evm.model.scaf_41.1069
fragaria_iinumae_evm.model.scaf_43.3 fragaria_iinumae fragaria_iinumae_evm.model.scaf_43.3
fragaria_iinumae_evm.model.scaf_43.5 fragaria_iinumae fragaria_iinumae_evm.model.scaf_43.5
fragaria_mandshurica_evm.model.chr6.3610 fragaria_mandshurica fragaria_mandshurica_evm.model.chr6.3610
fragaria_mandshurica_evm.model.chr6.98 fragaria_mandshurica fragaria_mandshurica_evm.model.chr6.98
FnilGWHABKC000000010001000.1 fragaria_nilgerrensis FnilGWHABKC000000010001000.1
FnilGWHABKC000000010039290.1 fragaria_nilgerrensis FnilGWHABKC000000010039290.1
FnilGWHABKC000000040152350.1 fragaria_nilgerrensis FnilGWHABKC000000040152350.1
fragaria_nipponica_augustus_masked-chr2-processed-gene-6.38-mRNA-1 fragaria_nipponica fragaria_nipponica_augustus_masked-chr2-processed-gene-6.38-mRNA-1
fragaria_nipponica_augustus_masked-chr6-processed-gene-115.15-mRNA-1 fragaria_nipponica fragaria_nipponica_augustus_masked-chr6-processed-gene-115.15-mRNA-1
fragaria_nipponica_maker-chr2-augustus-gene-6.7-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr2-augustus-gene-6.7-mRNA-1
fragaria_nipponica_maker-chr3-augustus-gene-72.99-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr3-augustus-gene-72.99-mRNA-1
fragaria_nipponica_maker-chr3-augustus-gene-73.57-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr3-augustus-gene-73.57-mRNA-1
fragaria_nipponica_maker-chr6-augustus-gene-526.43-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr6-augustus-gene-526.43-mRNA-1
fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-170.75-mRNA-1 fragaria_nipponica fragaria_nipponica_maker-chr7-exonerate_protein2genome-gene-170.75-mRNA-1
fragaria_nubicola_evm.model.ctg161.275 fragaria_nubicola fragaria_nubicola_evm.model.ctg161.275
fragaria_nubicola_evm.model.ctg161.277 fragaria_nubicola fragaria_nubicola_evm.model.ctg161.277