PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
FanaFAN_r2.3ch00152760 fragaria_ananassa FanaFAN_r2.3ch00152760
FanaFAN_r2.3ch00287040 fragaria_ananassa FanaFAN_r2.3ch00287040
FanaFAN_r2.3ch00306510 fragaria_ananassa FanaFAN_r2.3ch00306510
FanaFAN_r2.3ch2Ava0518900 fragaria_ananassa FanaFAN_r2.3ch2Ava0518900
FanaFAN_r2.3ch2Bia0587150 fragaria_ananassa FanaFAN_r2.3ch2Bia0587150
FanaFAN_r2.3ch3Bia0755610 fragaria_ananassa FanaFAN_r2.3ch3Bia0755610
FanaFAN_r2.3ch4X1b1005820 fragaria_ananassa FanaFAN_r2.3ch4X1b1005820
FanaFAN_r2.3ch4X2a1023280 fragaria_ananassa FanaFAN_r2.3ch4X2a1023280
FanaFAN_r2.3ch5Ava1041900 fragaria_ananassa FanaFAN_r2.3ch5Ava1041900
FanaFAN_r2.3ch6Av1a1257630 fragaria_ananassa FanaFAN_r2.3ch6Av1a1257630
FanaFAN_r2.3ch6Av1b1273810 fragaria_ananassa FanaFAN_r2.3ch6Av1b1273810
FanaFAN_r2.3ch6X1a1390400 fragaria_ananassa FanaFAN_r2.3ch6X1a1390400
FanaFAN_r2.3ch6X1b1418640 fragaria_ananassa FanaFAN_r2.3ch6X1b1418640
FanaFAN_r2.3ch6X1b1437490 fragaria_ananassa FanaFAN_r2.3ch6X1b1437490
FanaFAN_r2.3ch7Ava1500520 fragaria_ananassa FanaFAN_r2.3ch7Ava1500520
FanaFAN_r2.3ch7Ava1504010 fragaria_ananassa FanaFAN_r2.3ch7Ava1504010
FanaFAN_r2.3ch7Avb1529970 fragaria_ananassa FanaFAN_r2.3ch7Avb1529970
FanaFAN_r2.3ch7Bia1555710 fragaria_ananassa FanaFAN_r2.3ch7Bia1555710
FanaFAN_r2.3ch7Bib1576100 fragaria_ananassa FanaFAN_r2.3ch7Bib1576100
FanaFAN_r2.3ch7X1a1597860 fragaria_ananassa FanaFAN_r2.3ch7X1a1597860
FanaFAN_r2.3ch7X1b1623180 fragaria_ananassa FanaFAN_r2.3ch7X1b1623180
FanaFAN_r2.3ch7X2a1648500 fragaria_ananassa FanaFAN_r2.3ch7X2a1648500
FanaFAN_r2.3ch7X2a1652960 fragaria_ananassa FanaFAN_r2.3ch7X2a1652960
FanaFAN_r2.3ch7X2b1670000 fragaria_ananassa FanaFAN_r2.3ch7X2b1670000
fragaria_chiloensis_maker-6A-augustus-gene-257.5-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6A-augustus-gene-257.5-mRNA-1
fragaria_chiloensis_maker-6B-augustus-gene-45.90-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6B-augustus-gene-45.90-mRNA-1
fragaria_chiloensis_maker-6C-augustus-gene-93.64-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6C-augustus-gene-93.64-mRNA-1
fragaria_chiloensis_maker-6D-augustus-gene-91.118-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-6D-augustus-gene-91.118-mRNA-1
fragaria_chiloensis_maker-7A-augustus-gene-152.11-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-7A-augustus-gene-152.11-mRNA-1
fragaria_chiloensis_maker-7B-augustus-gene-67.96-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-7B-augustus-gene-67.96-mRNA-1