PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
fragaria_x_ananassa_maker-Fvb6-2-augustus-gene-174.36-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb6-2-augustus-gene-174.36-mRNA-1
fragaria_x_ananassa_maker-Fvb6-2-snap-gene-317.60-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb6-2-snap-gene-317.60-mRNA-1
fragaria_x_ananassa_maker-Fvb6-4-augustus-gene-113.28-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb6-4-augustus-gene-113.28-mRNA-1
fragaria_x_ananassa_maker-Fvb6-4-augustus-gene-327.55-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb6-4-augustus-gene-327.55-mRNA-1
fragaria_x_ananassa_maker-Fvb7-1-augustus-gene-214.51-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-1-augustus-gene-214.51-mRNA-1
fragaria_x_ananassa_maker-Fvb7-1-augustus-gene-236.35-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-1-augustus-gene-236.35-mRNA-1
fragaria_x_ananassa_maker-Fvb7-2-augustus-gene-144.48-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-2-augustus-gene-144.48-mRNA-1
fragaria_x_ananassa_maker-Fvb7-2-augustus-gene-211.53-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-2-augustus-gene-211.53-mRNA-1
fragaria_x_ananassa_maker-Fvb7-3-augustus-gene-86.41-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-3-augustus-gene-86.41-mRNA-1
fragaria_x_ananassa_maker-Fvb7-4-augustus-gene-83.24-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb7-4-augustus-gene-83.24-mRNA-1
FexcContig10100002800.1 fraxinus_excelsior FexcContig10100002800.1
FexcContig12340025680.1 fraxinus_excelsior FexcContig12340025680.1
FexcContig12340025690.1 fraxinus_excelsior FexcContig12340025690.1
FexcContig13600037450.1 fraxinus_excelsior FexcContig13600037450.1
FexcContig13600037450.2 fraxinus_excelsior FexcContig13600037450.2
FexcContig17590069160.1 fraxinus_excelsior FexcContig17590069160.1
FexcContig200088430.1 fraxinus_excelsior FexcContig200088430.1
FexcContig26310134820.1 fraxinus_excelsior FexcContig26310134820.1
FexcContig26310134830.1 fraxinus_excelsior FexcContig26310134830.1
FexcContig30710162040.1 fraxinus_excelsior FexcContig30710162040.1
FexcContig30710162040.2 fraxinus_excelsior FexcContig30710162040.2
FexcContig30710162050.1 fraxinus_excelsior FexcContig30710162050.1
FexcContig4470230820.1 fraxinus_excelsior FexcContig4470230820.1
FexcContig5500271070.1 fraxinus_excelsior FexcContig5500271070.1
FexcContig5500271070.2 fraxinus_excelsior FexcContig5500271070.2
FexcContig57280280380.1 fraxinus_excelsior FexcContig57280280380.1
FexcContig6860315710.1 fraxinus_excelsior FexcContig6860315710.1
fraxinus_pennsylvanica_Fp_g11352 fraxinus_pennsylvanica fraxinus_pennsylvanica_Fp_g11352
fraxinus_pennsylvanica_Fp_g11354 fraxinus_pennsylvanica fraxinus_pennsylvanica_Fp_g11354
fraxinus_pennsylvanica_Fp_g13359 fraxinus_pennsylvanica fraxinus_pennsylvanica_Fp_g13359