PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
Fhygscaffold_250253890 funaria_hygrometrica Fhygscaffold_250253890
Fhygscaffold_90366480 funaria_hygrometrica Fhygscaffold_90366480
Gackstroemia3684770003480 gackstroemia Gackstroemia3684770003480
Gackstroemia5566160060910 gackstroemia Gackstroemia5566160060910
Gackstroemia5925240100610 gackstroemia Gackstroemia5925240100610
Gackstroemia5961500108000 gackstroemia Gackstroemia5961500108000
Gackstroemia6066420133610 gackstroemia Gackstroemia6066420133610
Gackstroemia6175880181010 gackstroemia Gackstroemia6175880181010
Gmag3684770003480 gackstroemia_magellanica Gmag3684770003480
Gmag5566160060910 gackstroemia_magellanica Gmag5566160060910
Gmag5925240100610 gackstroemia_magellanica Gmag5925240100610
Gmag5961500108000 gackstroemia_magellanica Gmag5961500108000
Gmag6066420133610 gackstroemia_magellanica Gmag6066420133610
Gmag6175880181010 gackstroemia_magellanica Gmag6175880181010
GelaGWHAAEX000000030002380.1 gastrodia_elata GelaGWHAAEX000000030002380.1
GelaGWHAAEX000000670087070.1 gastrodia_elata GelaGWHAAEX000000670087070.1
GelaGWHAAEX000001020120110.1 gastrodia_elata GelaGWHAAEX000001020120110.1
GelaGWHAAEX000002080171150.1 gastrodia_elata GelaGWHAAEX000002080171150.1
GelaGWHAAEX000002080171180.1 gastrodia_elata GelaGWHAAEX000002080171180.1
GelaGWHAAEX000018520188730.1 gastrodia_elata GelaGWHAAEX000018520188730.1
gastrodia_menghaiensis_evm.model.scaffold_336.13 gastrodia_menghaiensis gastrodia_menghaiensis_evm.model.scaffold_336.13
gastrodia_menghaiensis_evm.model.scaffold_54.18 gastrodia_menghaiensis gastrodia_menghaiensis_evm.model.scaffold_54.18
Gtri01G0001120 gilleni_trifoliata Gtri01G0001120
Gtri01G0001310 gilleni_trifoliata Gtri01G0001310
Gtri02G0015200 gilleni_trifoliata Gtri02G0015200
Gtri08G0018860 gilleni_trifoliata Gtri08G0018860
Gtri09G0020010 gilleni_trifoliata Gtri09G0020010
GtriScaffold2960004280 gilleni_trifoliata GtriScaffold2960004280
GtriScaffold2960004290 gilleni_trifoliata GtriScaffold2960004290
Gt00003339 gillenia_trifoliata Gt00003339