PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
Jhin02G0021680 juglans_hindsii Jhin02G0021680
Jhin04G0017860 juglans_hindsii Jhin04G0017860
Jhin04G0017880 juglans_hindsii Jhin04G0017880
Jhin04G0017900 juglans_hindsii Jhin04G0017900
Jhin05G0018880 juglans_hindsii Jhin05G0018880
Jhin09G0018440 juglans_hindsii Jhin09G0018440
juglans_mandshurica_rna-Jman001T0036800.1 juglans_mandshurica juglans_mandshurica_rna-Jman001T0036800.1
juglans_mandshurica_rna-Jman003T0188700.1 juglans_mandshurica juglans_mandshurica_rna-Jman003T0188700.1
juglans_mandshurica_rna-Jman006T0180500.1 juglans_mandshurica juglans_mandshurica_rna-Jman006T0180500.1
juglans_mandshurica_rna-Jman006T0180600.1 juglans_mandshurica juglans_mandshurica_rna-Jman006T0180600.1
juglans_mandshurica_rna-Jman006T0180800.1 juglans_mandshurica juglans_mandshurica_rna-Jman006T0180800.1
juglans_mandshurica_rna-Jman006T0180900.1 juglans_mandshurica juglans_mandshurica_rna-Jman006T0180900.1
juglans_mandshurica_rna-Jman006T0181100.1 juglans_mandshurica juglans_mandshurica_rna-Jman006T0181100.1
juglans_mandshurica_rna-Jman006T0181300.1 juglans_mandshurica juglans_mandshurica_rna-Jman006T0181300.1
juglans_mandshurica_rna-Jman008T0066800.1 juglans_mandshurica juglans_mandshurica_rna-Jman008T0066800.1
juglans_mandshurica_rna-Jman010T0027100.1 juglans_mandshurica juglans_mandshurica_rna-Jman010T0027100.1
JmicC8082790033260.1 juglans_microcarpa JmicC8082790033260.1
JmicC8110790042500.1 juglans_microcarpa JmicC8110790042500.1
JmicC8111370042750.1 juglans_microcarpa JmicC8111370042750.1
JmicC8134830054720.1 juglans_microcarpa JmicC8134830054720.1
Jmicscaffold21510138250.1 juglans_microcarpa Jmicscaffold21510138250.1
Jmicscaffold21730139850.1 juglans_microcarpa Jmicscaffold21730139850.1
Jmicscaffold21900141870.1 juglans_microcarpa Jmicscaffold21900141870.1
Jmicscaffold26620161840.1 juglans_microcarpa Jmicscaffold26620161840.1
Jmicscaffold29310170610.1 juglans_microcarpa Jmicscaffold29310170610.1
Jmicscaffold36230199390.1 juglans_microcarpa Jmicscaffold36230199390.1
Jmicscaffold47530241830.1 juglans_microcarpa Jmicscaffold47530241830.1
Jmicscaffold61160290230.1 juglans_microcarpa Jmicscaffold61160290230.1
Jmicscaffold62280294810.1 juglans_microcarpa Jmicscaffold62280294810.1
juglans_microcarpa_x_regia_XP_040999826.1 juglans_microcarpa_x_regia juglans_microcarpa_x_regia_XP_040999826.1