PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
Oruf02G0025910.1 oryza_rufipogon Oruf02G0025910.1
Oruf04G0020190.1 oryza_rufipogon Oruf04G0020190.1
Oruf04G0020220.1 oryza_rufipogon Oruf04G0020220.1
Oruf04G0020240.1 oryza_rufipogon Oruf04G0020240.1
Oruf05G0003580.1 oryza_rufipogon Oruf05G0003580.1
Oruf05G0018240.1 oryza_rufipogon Oruf05G0018240.1
Oruf08G0011240.1 oryza_rufipogon Oruf08G0011240.1
Oruf11G0025600.1 oryza_rufipogon Oruf11G0025600.1
Oruf12G0012450.1 oryza_rufipogon Oruf12G0012450.1
Oruf12G0015200.1 oryza_rufipogon Oruf12G0015200.1
Osat02G0028760.1 oryza_sativa Osat02G0028760.1
Osat02G0028770.1 oryza_sativa Osat02G0028770.1
Osat02G0028770.2 oryza_sativa Osat02G0028770.2
Osat02G0028770.3 oryza_sativa Osat02G0028770.3
Osat02G0028780.1 oryza_sativa Osat02G0028780.1
Osat02G0028790.1 oryza_sativa Osat02G0028790.1
Osat04G0024530.1 oryza_sativa Osat04G0024530.1
Osat04G0024530.2 oryza_sativa Osat04G0024530.2
Osat04G0024560.1 oryza_sativa Osat04G0024560.1
Osat05G0020850.1 oryza_sativa Osat05G0020850.1
Osat08G0013210.1 oryza_sativa Osat08G0013210.1
Osat11G0030150.1 oryza_sativa Osat11G0030150.1
Osat12G0019030.1 oryza_sativa Osat12G0019030.1
OsatMH6302G0040600.1 oryza_sativa_spmh63 OsatMH6302G0040600.1
OsatMH6302G0040600.2 oryza_sativa_spmh63 OsatMH6302G0040600.2
OsatMH6302G0040600.3 oryza_sativa_spmh63 OsatMH6302G0040600.3
OsatMH6302G0040600.4 oryza_sativa_spmh63 OsatMH6302G0040600.4
OsatMH6302G0040610.1 oryza_sativa_spmh63 OsatMH6302G0040610.1
OsatMH6302G0040640.1 oryza_sativa_spmh63 OsatMH6302G0040640.1
OsatMH6304G0005150.1 oryza_sativa_spmh63 OsatMH6304G0005150.1