PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
OoffiChr02g02192.1 oryza_officinalis OoffiChr02g02192.1
OoffiChr02g02193.1 oryza_officinalis OoffiChr02g02193.1
OoffiChr04g01221.1 oryza_officinalis OoffiChr04g01221.1
OoffiChr04g01223.1 oryza_officinalis OoffiChr04g01223.1
OoffiChr05g01430.1 oryza_officinalis OoffiChr05g01430.1
OoffiChr10g00629.1 oryza_officinalis OoffiChr10g00629.1
OPUNC01G41510.1 oryza_punctata OPUNC01G41510.1
OPUNC02G22510.1 oryza_punctata OPUNC02G22510.1
OPUNC02G22520.1 oryza_punctata OPUNC02G22520.1
OPUNC02G22530.1 oryza_punctata OPUNC02G22530.1
OPUNC02G22540.1 oryza_punctata OPUNC02G22540.1
OPUNC02G22550.1 oryza_punctata OPUNC02G22550.1
OPUNC02G22560.1 oryza_punctata OPUNC02G22560.1
OPUNC04G16580.1 oryza_punctata OPUNC04G16580.1
OPUNC04G16600.1 oryza_punctata OPUNC04G16600.1
OPUNC05G03320.1 oryza_punctata OPUNC05G03320.1
OPUNC05G15280.1 oryza_punctata OPUNC05G15280.1
OPUNC08G08720.1 oryza_punctata OPUNC08G08720.1
OPUNC11G20190.1 oryza_punctata OPUNC11G20190.1
OPUNC11G20200.1 oryza_punctata OPUNC11G20200.1
Orhiscaffold13430033510.1 oryza_rhizomatis Orhiscaffold13430033510.1
Orhiscaffold14310041220.1 oryza_rhizomatis Orhiscaffold14310041220.1
Orhiscaffold37640175390.1 oryza_rhizomatis Orhiscaffold37640175390.1
Orhiscaffold4970218700.1 oryza_rhizomatis Orhiscaffold4970218700.1
Orhiscaffold64340259670.1 oryza_rhizomatis Orhiscaffold64340259670.1
Orhiscaffold8370299520.1 oryza_rhizomatis Orhiscaffold8370299520.1
Orhiscaffold93690313700.1 oryza_rhizomatis Orhiscaffold93690313700.1
Oruf02G0025880.1 oryza_rufipogon Oruf02G0025880.1
Oruf02G0025890.1 oryza_rufipogon Oruf02G0025890.1
Oruf02G0025900.1 oryza_rufipogon Oruf02G0025900.1