PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
OoffiChr01g02834.1 Alkaloid 16OMT medium borderline
OoffiChr02g00374.1 Alkaloid 16OMT medium borderline
OoffiChr05g01902.1 Alkaloid 16OMT medium borderline
OoffiChr05g01903.1 Alkaloid 16OMT medium borderline
OoffiChr06g01019.2 Alkaloid 16OMT medium borderline
OoffiChr06g02385.1 Alkaloid 16OMT low borderline
OoffiChr07g00525.1 Alkaloid 16OMT medium borderline
OoffiChr07g02192.1 Alkaloid 16OMT medium borderline
OoffiChr08g00328.1 Alkaloid 16OMT medium borderline
OoffiChr08g00417.2 Alkaloid 16OMT medium borderline
OoffiChr08g00793.1 Alkaloid 16OMT medium borderline
OoffiChr08g01282.1 Alkaloid 16OMT medium borderline
OoffiChr09g00463.1 Alkaloid 16OMT medium borderline
OoffiChr09g01580.1 Alkaloid 16OMT low borderline
OoffiChr10g00085.1 Alkaloid 16OMT medium borderline
OoffiChr11g00799.1 Alkaloid 16OMT medium borderline
OoffiChr11g00800.1 Alkaloid 16OMT medium borderline
OoffiChr11g00801.1 Alkaloid 16OMT medium borderline
OoffiChr11g00802.1 Alkaloid 16OMT medium borderline
OoffiChr11g00803.1 Alkaloid 16OMT medium borderline
OoffiChr11g00987.1 Alkaloid 16OMT medium borderline
OoffiChr12g01121.1 Alkaloid 16OMT medium borderline
OoffiChr12g01123.1 Alkaloid 16OMT medium borderline
OoffiChr12g01125.1 Alkaloid 16OMT medium borderline
OoffiChr08g00417.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
OoffiChr11g00229.1 Alkaloid 6OMT_4OMT_SOMT low borderline
OoffiChr01g00520.1 Alkaloid 7DLGT low borderline
OoffiChr01g00551.1 Alkaloid 7DLGT medium pass
OoffiChr01g00732.1 Alkaloid 7DLGT low borderline
OoffiChr01g00733.1 Alkaloid 7DLGT low borderline
OoffiChr01g00734.1 Alkaloid 7DLGT low borderline
OoffiChr01g00735.1 Alkaloid 7DLGT low borderline
OoffiChr01g00737.1 Alkaloid 7DLGT low borderline
OoffiChr01g01945.1 Alkaloid 7DLGT low borderline
OoffiChr01g02046.1 Alkaloid 7DLGT medium pass
OoffiChr01g02047.1 Alkaloid 7DLGT medium pass
OoffiChr01g02048.1 Alkaloid 7DLGT medium pass
OoffiChr01g02049.1 Alkaloid 7DLGT medium pass
OoffiChr01g02117.1 Alkaloid 7DLGT low borderline
OoffiChr01g02118.1 Alkaloid 7DLGT low borderline
OoffiChr01g02679.1 Alkaloid 7DLGT medium pass
OoffiChr01g02680.1 Alkaloid 7DLGT medium pass
OoffiChr01g02681.1 Alkaloid 7DLGT low borderline
OoffiChr01g02682.1 Alkaloid 7DLGT low borderline
OoffiChr01g02683.1 Alkaloid 7DLGT medium pass
OoffiChr01g02685.1 Alkaloid 7DLGT medium pass
OoffiChr01g02732.1 Alkaloid 7DLGT medium pass
OoffiChr01g03070.1 Alkaloid 7DLGT low borderline
OoffiChr01g03422.1 Alkaloid 7DLGT low borderline
OoffiChr02g00636.1 Alkaloid 7DLGT low borderline