PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
OoffiChr01g00520.1 Alkaloid 7DLGT low borderline
OoffiChr01g00551.1 Alkaloid 7DLGT medium pass
OoffiChr01g00732.1 Alkaloid 7DLGT low borderline
OoffiChr01g00733.1 Alkaloid 7DLGT low borderline
OoffiChr01g00734.1 Alkaloid 7DLGT low borderline
OoffiChr01g00735.1 Alkaloid 7DLGT low borderline
OoffiChr01g00737.1 Alkaloid 7DLGT low borderline
OoffiChr01g01945.1 Alkaloid 7DLGT low borderline
OoffiChr01g02046.1 Alkaloid 7DLGT medium pass
OoffiChr01g02047.1 Alkaloid 7DLGT medium pass
OoffiChr01g02048.1 Alkaloid 7DLGT medium pass
OoffiChr01g02049.1 Alkaloid 7DLGT medium pass
OoffiChr01g02117.1 Alkaloid 7DLGT low borderline
OoffiChr01g02118.1 Alkaloid 7DLGT low borderline
OoffiChr01g02679.1 Alkaloid 7DLGT medium pass
OoffiChr01g02680.1 Alkaloid 7DLGT medium pass
OoffiChr01g02681.1 Alkaloid 7DLGT low borderline
OoffiChr01g02682.1 Alkaloid 7DLGT low borderline
OoffiChr01g02683.1 Alkaloid 7DLGT medium pass
OoffiChr01g02685.1 Alkaloid 7DLGT medium pass
OoffiChr01g02732.1 Alkaloid 7DLGT medium pass
OoffiChr01g03070.1 Alkaloid 7DLGT low borderline
OoffiChr01g03422.1 Alkaloid 7DLGT low borderline
OoffiChr02g00636.1 Alkaloid 7DLGT low borderline
OoffiChr02g00758.1 Alkaloid 7DLGT low borderline
OoffiChr02g00761.1 Alkaloid 7DLGT low borderline
OoffiChr02g00762.1 Alkaloid 7DLGT low borderline
OoffiChr02g00809.1 Alkaloid 7DLGT low borderline
OoffiChr02g00810.1 Alkaloid 7DLGT low borderline
OoffiChr02g00964.1 Alkaloid 7DLGT medium pass
OoffiChr02g00973.1 Alkaloid 7DLGT low borderline
OoffiChr02g01390.1 Alkaloid 7DLGT low borderline
OoffiChr02g01744.1 Alkaloid 7DLGT low borderline
OoffiChr02g01914.1 Alkaloid 7DLGT high pass
OoffiChr02g01915.1 Alkaloid 7DLGT medium pass
OoffiChr02g01916.1 Alkaloid 7DLGT medium pass
OoffiChr02g02231.1 Alkaloid 7DLGT low borderline
OoffiChr02g02829.1 Alkaloid 7DLGT medium pass
OoffiChr02g02830.1 Alkaloid 7DLGT medium pass
OoffiChr02g02831.1 Alkaloid 7DLGT medium pass
OoffiChr02g03143.1 Alkaloid 7DLGT low borderline
OoffiChr02g03144.1 Alkaloid 7DLGT medium pass
OoffiChr03g00088.1 Alkaloid 7DLGT medium pass
OoffiChr03g00785.1 Alkaloid 7DLGT low borderline
OoffiChr03g02558.1 Alkaloid 7DLGT low borderline
OoffiChr03g02579.1 Alkaloid 7DLGT medium pass
OoffiChr03g02627.1 Alkaloid 7DLGT low borderline
OoffiChr03g02628.1 Alkaloid 7DLGT low borderline
OoffiChr03g02631.1 Alkaloid 7DLGT low borderline
OoffiChr03g02632.1 Alkaloid 7DLGT low borderline