PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status
OoffiChr01g00047.1 Alkaloid G8O/G8H medium borderline
OoffiChr01g00860.2 Alkaloid G8O/G8H medium borderline
OoffiChr01g00860.3 Alkaloid G8O/G8H medium borderline
OoffiChr01g02087.1 Alkaloid G8O/G8H low borderline
OoffiChr01g02796.1 Alkaloid G8O/G8H medium pass
OoffiChr01g02797.1 Alkaloid G8O/G8H medium borderline
OoffiChr02g00060.1 Alkaloid G8O/G8H medium borderline
OoffiChr02g00866.1 Alkaloid G8O/G8H medium borderline
OoffiChr02g00867.1 Alkaloid G8O/G8H medium borderline
OoffiChr02g00881.1 Alkaloid G8O/G8H medium borderline
OoffiChr02g01565.1 Alkaloid G8O/G8H low borderline
OoffiChr02g01567.1 Alkaloid G8O/G8H medium borderline
OoffiChr03g00223.1 Alkaloid G8O/G8H medium borderline
OoffiChr03g01010.1 Alkaloid G8O/G8H medium borderline
OoffiChr03g02060.1 Alkaloid G8O/G8H medium borderline
OoffiChr03g02131.1 Alkaloid G8O/G8H medium borderline
OoffiChr04g00120.1 Alkaloid G8O/G8H medium borderline
OoffiChr04g00460.1 Alkaloid G8O/G8H medium borderline
OoffiChr05g01907.1 Alkaloid G8O/G8H medium borderline
OoffiChr06g00095.1 Alkaloid G8O/G8H low borderline
OoffiChr06g01080.1 Alkaloid G8O/G8H medium borderline
OoffiChr06g01688.1 Alkaloid G8O/G8H medium borderline
OoffiChr06g01690.1 Alkaloid G8O/G8H medium borderline
OoffiChr07g01067.1 Alkaloid G8O/G8H medium borderline
OoffiChr07g01262.1 Alkaloid G8O/G8H medium borderline
OoffiChr07g01263.1 Alkaloid G8O/G8H medium borderline
OoffiChr07g02013.1 Alkaloid G8O/G8H medium borderline
OoffiChr08g00050.1 Alkaloid G8O/G8H low borderline
OoffiChr08g01223.1 Alkaloid G8O/G8H medium borderline
OoffiChr09g01380.1 Alkaloid G8O/G8H low borderline
OoffiChr10g00291.1 Alkaloid G8O/G8H medium borderline
OoffiChr10g00720.1 Alkaloid G8O/G8H medium borderline
OoffiChr10g00927.1 Alkaloid G8O/G8H medium pass
OoffiChr10g00928.3 Alkaloid G8O/G8H medium borderline
OoffiChr10g01312.1 Alkaloid G8O/G8H medium borderline
OoffiChr10g01313.1 Alkaloid G8O/G8H medium borderline
OoffiChr10g01314.1 Alkaloid G8O/G8H medium borderline
OoffiChr10g01368.1 Alkaloid G8O/G8H medium borderline
OoffiChr11g00891.1 Alkaloid G8O/G8H medium borderline
OoffiChr12g01574.3 Alkaloid G8O/G8H medium borderline
OoffiChr12g01575.1 Alkaloid G8O/G8H medium borderline