PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status Best Target
OoffiChr01g03162.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr01g03999.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr02g00622.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr02g00625.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr02g01506.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr02g01507.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr02g02040.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr03g01699.2 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr03g01933.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr03g01986.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr04g00121.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr04g02024.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr05g01416.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr05g01834.1 Alkaloid T16H medium pass T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr05g01835.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr06g01965.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr06g01965.2 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr06g01969.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr07g01615.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr08g00208.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr08g00773.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr08g01357.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr09g00453.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr09g00454.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr09g00966.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr09g00966.2 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr10g01306.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr11g00363.1 Alkaloid T16H medium borderline T16H__00002__sp_U5HKE8_C71DZ_CATRO
OoffiChr11g00946.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr12g00133.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO
OoffiChr12g01352.1 Alkaloid T16H medium borderline T16H__00001__sp_P98183_C71DC_CATRO