PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
OoffiChr01g01670.1 Alkaloid PYKS low borderline
OoffiChr01g01953.1 Alkaloid PYKS medium pass
OoffiChr02g03207.1 Alkaloid PYKS low borderline
OoffiChr03g00445.1 Alkaloid PYKS low borderline
OoffiChr03g00567.1 Alkaloid PYKS low borderline
OoffiChr03g00834.1 Alkaloid PYKS low borderline
OoffiChr03g00990.1 Alkaloid PYKS low borderline
OoffiChr04g00017.1 Alkaloid PYKS high pass
OoffiChr04g01988.1 Alkaloid PYKS low borderline
OoffiChr04g01988.2 Alkaloid PYKS low borderline
OoffiChr05g00617.1 Alkaloid PYKS high pass
OoffiChr05g02253.1 Alkaloid PYKS low borderline
OoffiChr05g02304.1 Alkaloid PYKS low borderline
OoffiChr06g01751.1 Alkaloid PYKS low borderline
OoffiChr07g01432.1 Alkaloid PYKS high pass
OoffiChr07g01477.1 Alkaloid PYKS high pass
OoffiChr07g01479.1 Alkaloid PYKS high pass
OoffiChr07g01603.1 Alkaloid PYKS high pass
OoffiChr07g01604.1 Alkaloid PYKS high pass
OoffiChr09g00508.1 Alkaloid PYKS low borderline
OoffiChr10g00242.1 Alkaloid PYKS low borderline
OoffiChr10g00276.1 Alkaloid PYKS high pass
OoffiChr10g00277.1 Alkaloid PYKS medium pass
OoffiChr10g00288.1 Alkaloid PYKS medium pass
OoffiChr10g00305.1 Alkaloid PYKS high pass
OoffiChr10g00306.1 Alkaloid PYKS high pass
OoffiChr10g00308.1 Alkaloid PYKS high pass
OoffiChr10g00309.1 Alkaloid PYKS high pass
OoffiChr10g00330.1 Alkaloid PYKS high pass
OoffiChr10g00331.1 Alkaloid PYKS high pass
OoffiChr10g00332.1 Alkaloid PYKS high pass
OoffiChr10g00336.1 Alkaloid PYKS high pass
OoffiChr10g00773.1 Alkaloid PYKS low borderline
OoffiChr10g01026.1 Alkaloid PYKS low borderline
OoffiChr10g01101.1 Alkaloid PYKS medium pass
OoffiChr10g01185.1 Alkaloid PYKS medium pass
OoffiChr11g00965.1 Alkaloid PYKS high pass
OoffiChr11g00966.1 Alkaloid PYKS high pass
OoffiChr11g01176.1 Alkaloid PYKS low borderline
OoffiChr11g01219.1 Alkaloid PYKS low borderline
OoffiChr11g01235.1 Alkaloid PYKS low borderline
OoffiChr12g00112.1 Alkaloid PYKS high pass