PlantSME Plant secondary metabolism enzyme database

Oryza officinalis (oryza_officinalis)

Imported from atlas release summary for Oryza officinalis.

1998
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 584 19 BAHD (239) View species results
Alkaloid pathway 440 23 7DLGT (66) View species results
Phenylpropanoid pathway 392 11 POD (200) View species results
Flavonoid pathway 249 12 UFGT (138) View species results
Steroid pathway 177 13 SMT1/SMT2/SMT3 (67) View species results
Rosmarinic acid pathway 156 7 C4H (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1683 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 408 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
Reset
Gene Pathway Family Confidence Status
OoffiChr01g01691.1 Alkaloid H6H low borderline
OoffiChr01g01900.1 Alkaloid H6H low borderline
OoffiChr01g02745.1 Alkaloid H6H low borderline
OoffiChr01g03215.1 Alkaloid H6H medium borderline
OoffiChr01g03230.2 Alkaloid H6H low borderline
OoffiChr01g03230.3 Alkaloid H6H low borderline
OoffiChr01g03529.1 Alkaloid H6H medium pass
OoffiChr01g03883.1 Alkaloid H6H medium borderline
OoffiChr02g01086.1 Alkaloid H6H medium borderline
OoffiChr02g01980.1 Alkaloid H6H low borderline
OoffiChr02g02925.1 Alkaloid H6H medium borderline
OoffiChr03g00645.1 Alkaloid H6H medium pass
OoffiChr03g02195.1 Alkaloid H6H low borderline
OoffiChr03g02198.1 Alkaloid H6H medium borderline
OoffiChr03g03570.1 Alkaloid H6H medium borderline
OoffiChr03g03579.1 Alkaloid H6H low borderline
OoffiChr04g02103.1 Alkaloid H6H low borderline
OoffiChr04g02133.1 Alkaloid H6H medium borderline
OoffiChr05g00172.1 Alkaloid H6H medium borderline
OoffiChr05g00368.1 Alkaloid H6H low borderline
OoffiChr05g01407.1 Alkaloid H6H medium pass
OoffiChr05g01908.1 Alkaloid H6H low borderline
OoffiChr05g02283.1 Alkaloid H6H low borderline
OoffiChr06g00482.1 Alkaloid H6H medium borderline
OoffiChr06g00484.1 Alkaloid H6H low borderline
OoffiChr06g00488.1 Alkaloid H6H low borderline
OoffiChr07g00013.1 Alkaloid H6H medium pass
OoffiChr07g00369.1 Alkaloid H6H medium borderline
OoffiChr07g00370.1 Alkaloid H6H medium pass
OoffiChr07g00440.1 Alkaloid H6H medium borderline
OoffiChr08g01104.1 Alkaloid H6H low borderline
OoffiChr08g01105.1 Alkaloid H6H low borderline
OoffiChr08g01388.1 Alkaloid H6H medium borderline
OoffiChr09g00070.1 Alkaloid H6H low borderline
OoffiChr09g00081.1 Alkaloid H6H low borderline
OoffiChr10g01424.1 Alkaloid H6H low borderline
OoffiChr10g01425.1 Alkaloid H6H medium borderline
OoffiChr10g01425.2 Alkaloid H6H medium borderline
OoffiChr12g00748.1 Alkaloid H6H low borderline